Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-57 225.7 115 100.0
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.8e-57 225.7 115 100.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 3.4e-56 221.5 115 98.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 9.9e-56 219.9 115 97.4
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.7e-55 219.2 115 97.4
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-51 205.7 115 89.6
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 7.1e-46 187.2 115 80.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.0e-45 184.1 115 80.0
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-44 183.0 115 79.1
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.3e-44 183.0 115 79.1
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-43 179.1 115 76.5
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.1e-41 173.3 115 73.9
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.2e-40 169.9 115 74.8
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.2e-40 169.9 115 73.0
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.6e-40 168.7 115 74.8
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.3e-39 166.4 117 74.4
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.0e-36 156.8 115 67.8
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-36 156.4 116 69.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.3e-36 156.4 116 69.0
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 8.7e-36 153.7 115 67.0
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 6.2e-34 147.5 117 67.5
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.3e-31 139.8 115 64.3
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-30 136.0 117 60.7
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.1e-29 132.5 118 60.2
BolC8t52343H Brassica oleracea HOM05D005226 ORTHO05D004666 1.5e-19 99.8 63 81.0
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 3.4e-16 88.6 116 48.3
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 5.9e-16 87.8 115 47.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.0e-15 87.0 106 46.2
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 5.0e-15 84.7 97 49.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.9e-14 82.8 113 44.2
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.5e-14 82.4 112 43.8
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.5e-14 82.4 99 50.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 3.2e-14 82.0 114 42.1
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 4.2e-14 81.6 112 45.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 4.2e-14 81.6 102 48.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 7.2e-14 80.9 106 47.2
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.2e-13 80.1 102 46.1
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-13 79.7 108 44.4
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.6e-13 79.7 106 44.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.6e-13 79.7 104 47.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.6e-13 79.7 103 46.6
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 101 43.6
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.7e-13 79.0 103 48.5
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 3.6e-13 78.6 102 42.2
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 3.6e-13 78.6 114 42.1
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-13 78.6 106 44.3
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 4.6e-13 78.2 110 45.5
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-12 76.6 106 43.4
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.3e-12 75.9 98 48.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.3e-12 75.9 89 42.7
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.0e-12 75.5 96 47.9
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 3.9e-12 75.1 97 43.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 5.1e-12 74.7 105 42.9
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 5.1e-12 74.7 96 41.7
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.8e-12 73.9 105 40.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.8e-12 73.9 105 40.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.8e-12 73.9 80 46.2
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.8e-12 73.9 99 43.4
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.1e-11 73.6 84 44.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.1e-11 73.6 99 45.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.5e-11 73.2 97 42.3
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.5e-11 72.4 103 44.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.5e-11 72.4 116 37.9
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 3.3e-11 72.0 93 47.3
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 4.3e-11 71.6 109 40.4
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 5.7e-11 71.2 74 56.8
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.7e-11 71.2 105 44.8
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 5.7e-11 71.2 102 46.1
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-11 71.2 119 38.7
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.7e-11 71.2 111 40.5
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 7.4e-11 70.9 99 41.4
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 7.4e-11 70.9 113 40.7
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 9.7e-11 70.5 124 36.3
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.3e-10 70.1 71 49.3
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-10 70.1 89 39.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-10 70.1 111 38.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-10 70.1 89 40.4
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.3e-10 70.1 101 43.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.7e-10 69.7 100 40.0
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-10 69.7 111 40.5
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.7e-10 69.7 71 47.9
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.7e-10 69.7 91 40.7
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 2.2e-10 69.3 106 41.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 2.2e-10 69.3 106 41.5
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 64 48.4
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 3.7e-10 68.6 119 35.3
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 3.7e-10 68.6 119 35.3
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 3.7e-10 68.6 119 35.3
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 3.7e-10 68.6 119 35.3
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.7e-10 68.6 103 44.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.7e-10 68.6 71 47.9
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 3.7e-10 68.6 114 36.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 4.8e-10 68.2 90 45.6
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 4.8e-10 68.2 64 54.7
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.8e-10 68.2 117 40.2
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.8e-10 68.2 117 40.2
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 4.8e-10 68.2 90 44.4
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.8e-10 68.2 112 39.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.8e-10 68.2 64 46.9
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 4.8e-10 68.2 93 45.2
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.8e-10 68.2 75 49.3
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 6.3e-10 67.8 117 40.2
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 8.2e-10 67.4 117 39.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 8.2e-10 67.4 117 39.3
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.2e-10 67.4 112 39.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 8.2e-10 67.4 105 40.0
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-09 67.0 98 37.8
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.4e-09 66.6 90 44.4
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.4e-09 66.6 90 42.2
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.8e-09 66.2 105 38.1
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.4e-09 65.9 95 43.2
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-09 65.9 64 53.1
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-09 65.9 64 53.1
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.1e-09 65.5 98 38.8
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.1e-09 65.5 113 38.1
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.1e-09 65.5 90 42.2
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 3.1e-09 65.5 68 48.5
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 4.1e-09 65.1 102 46.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.1e-09 65.1 102 36.3
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.1e-09 65.1 112 38.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 5.3e-09 64.7 102 37.3
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 6.9e-09 64.3 97 38.1
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 6.9e-09 64.3 115 36.5
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.9e-09 64.3 112 35.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.9e-09 64.3 107 34.6
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.2e-08 63.5 119 34.5
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.2e-08 63.5 119 35.3
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.0e-08 62.8 112 39.3
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-08 62.8 99 40.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 68 47.1
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 100 39.0
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 100 39.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.0e-08 62.8 114 40.4
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 87 37.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.6e-08 62.4 99 36.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.6e-08 62.4 96 42.7
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 3.4e-08 62.0 119 34.5
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 4.5e-08 61.6 124 34.7
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 4.5e-08 61.6 90 43.3
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 5.9e-08 61.2 88 44.3
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 5.9e-08 61.2 67 53.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.9e-08 61.2 67 53.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 7.7e-08 60.8 76 42.1
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 7.7e-08 60.8 81 42.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 7.7e-08 60.8 120 32.5
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.3e-07 60.1 62 51.6
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.3e-07 60.1 91 41.8
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-07 59.3 75 42.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.2e-07 59.3 75 42.7
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 5.0e-07 58.2 73 43.8
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 6.5e-07 57.8 55 50.9
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 8.5e-07 57.4 118 33.9
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 8.5e-07 57.4 74 44.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 8.5e-07 57.4 74 44.6
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 8.5e-07 57.4 74 44.6
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 8.5e-07 57.4 89 36.0
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.1e-06 57.0 92 34.8
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-06 56.6 74 41.9
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.5e-06 55.8 123 33.3
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.2e-06 55.5 89 36.0
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 3.2e-06 55.5 56 57.1
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 4.2e-06 55.1 102 32.4
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.2e-06 54.3 60 53.3
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 7.2e-06 54.3 62 48.4
arahy.Tifrunner.gnm1.ann1.6X23CA Arachis hypogaea HOM05D005226 ORTHO05D004666 9.4e-06 53.9 75 41.3


User provided reference genes

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