Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 0.0e+00 1112.8 564 100.0
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 6.1e-308 1060.1 549 98.4
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 4.8e-297 1023.8 571 91.9
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.8e-296 1021.9 571 91.8
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.0e-286 989.6 555 91.5
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 4.3e-245 851.3 596 76.3
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 2.1e-244 849.0 588 77.2
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 6.7e-222 774.2 588 73.3
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 6.7e-222 774.2 588 72.4
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 9.6e-221 770.4 588 71.8
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 6.9e-219 764.2 598 70.2
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 1.6e-186 656.8 614 61.7
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 2.1e-183 646.4 389 85.3
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.3e-132 477.6 617 50.1
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 2.1e-130 470.3 577 51.1
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.2e-108 397.1 640 45.9
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 1.3e-105 387.9 652 43.7
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 5.1e-105 386.0 639 43.7
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 9.6e-104 381.7 626 43.5
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 6.2e-103 379.0 630 44.3
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 6.2e-103 379.0 630 44.3
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 1.8e-102 377.5 640 43.8
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.8e-102 377.5 637 43.8
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.4e-102 377.1 627 45.0
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.1e-99 368.2 666 41.6
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.9e-99 367.5 637 43.5
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 9.3e-99 365.2 639 42.6
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.0e-97 361.7 646 42.3
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 3.0e-97 360.1 642 43.6
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 3.9e-97 359.8 633 40.9
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 5.1e-97 359.4 633 42.3
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.1e-96 358.2 632 42.9
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 1.8e-94 350.9 633 42.5
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 3.4e-93 346.7 635 42.7
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 2.2e-92 344.0 650 39.7
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 3.8e-92 343.2 624 41.5
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 5.0e-92 342.8 641 40.6
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 2.7e-90 337.0 635 42.5
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.8e-89 334.3 652 38.8
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 2.3e-89 334.0 653 40.6
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 4.3e-88 329.7 636 40.1
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 4.3e-88 329.7 648 39.0
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 2.8e-87 327.0 684 38.7
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 6.3e-87 325.9 649 41.8
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.1e-86 325.1 651 38.9
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 1.8e-86 324.3 664 40.2
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 3.1e-86 323.6 651 37.6
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 4.1e-86 323.2 631 39.9
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 5.3e-86 322.8 648 38.4
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 6.9e-86 322.4 640 40.0
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.2e-85 321.6 628 39.8
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.2e-85 321.6 642 40.2
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 1.5e-85 321.2 638 40.1
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 2.6e-85 320.5 619 41.0
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 7.7e-85 318.9 641 40.6
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 7.7e-85 318.9 647 38.8
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 5.0e-84 316.2 645 40.0
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 6.5e-84 315.8 630 39.2
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.9e-83 314.3 638 40.1
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 9.4e-83 312.0 661 39.3
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 3.6e-82 310.1 631 40.9
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 3.0e-81 307.0 627 39.7
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.6e-80 303.9 631 39.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 4.4e-80 303.1 478 43.5
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 4.8e-79 299.7 639 39.0
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 8.2e-79 298.9 636 37.9
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.1e-78 297.0 630 38.3
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 5.3e-78 296.2 626 38.7
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 4.5e-77 293.1 637 39.4
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 5.9e-77 292.7 643 38.7
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.7e-76 291.2 671 36.4
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.7e-76 291.2 630 39.4
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 8.5e-76 288.9 651 38.1
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.4e-75 288.1 662 37.2
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 1.4e-75 288.1 644 37.3
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 2.1e-74 284.3 644 38.2
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 2.7e-74 283.9 620 37.7
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 3.6e-74 283.5 440 44.8
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 8.0e-74 282.3 546 39.9
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 1.0e-73 282.0 653 35.7
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.0e-73 282.0 613 38.3
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 2.3e-73 280.8 629 37.5
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 8.8e-73 278.9 656 36.4
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 8.8e-73 278.9 616 38.8
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 1.1e-72 278.5 635 36.9
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 3.7e-71 273.5 641 38.1
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 6.3e-71 272.7 430 41.6
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.3e-71 272.7 609 38.9
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 4.1e-70 270.0 641 37.8
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.9e-68 263.8 638 36.1
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 3.8e-68 263.5 626 36.6
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 5.0e-68 263.1 596 38.4
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 6.5e-68 262.7 695 35.5
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 5.5e-67 259.6 587 38.5
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 9.4e-67 258.8 595 37.8
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.2e-66 258.5 623 36.0
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 8.0e-66 255.8 623 38.4
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.8e-65 254.6 641 35.3
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 6.8e-65 252.7 604 36.6
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.4e-64 250.4 627 36.0
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 1.3e-63 248.4 643 36.4
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 4.8e-63 246.5 495 39.2
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 6.3e-63 246.1 689 32.7
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 8.3e-63 245.7 596 36.4
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 6.5e-60 236.1 494 39.7
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 9.4e-59 232.3 587 34.6
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 7.5e-56 222.6 657 33.8
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 1.4e-54 218.4 598 33.4
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 7.0e-54 216.1 471 37.6
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 2.9e-52 210.7 615 37.4
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.1e-51 208.8 629 32.0
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 9.5e-51 205.7 461 35.6
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 4.7e-50 203.4 757 29.5
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 5.2e-49 199.9 664 31.9
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 2.0e-48 198.0 458 33.8
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 3.4e-48 197.2 417 36.2
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.8e-47 194.1 465 35.3
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 1.1e-46 192.2 453 35.1
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 2.0e-45 188.0 364 41.5
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 5.0e-44 183.3 470 34.7
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 5.0e-44 183.3 720 31.8
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 2.2e-39 167.9 615 31.5
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 3.7e-39 167.2 613 32.1
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 8.0e-34 149.4 210 48.1
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.4e-33 148.7 416 31.5
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 1.4e-33 148.7 136 61.0
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.2e-32 145.6 133 60.2
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 1.8e-25 121.7 197 48.2
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 7.8e-21 106.3 378 31.2
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 1.5e-19 102.1 711 25.5
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 2.8e-18 97.8 118 50.0
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 3.1e-17 94.4 119 47.9
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 2.0e-16 91.7 109 48.6
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 4.8e-10 70.5 116 39.7


User provided reference genes

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