Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 4.5e-234 814.3 436 100.0
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 2.9e-201 705.3 451 86.7
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 1.1e-200 703.4 476 83.2
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 3.3e-200 701.8 444 87.4
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 3.5e-186 655.2 459 82.1
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 3.9e-169 598.6 435 77.7
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 3.1e-158 562.4 436 72.7
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 2.1e-143 513.1 409 74.1
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 4.9e-140 501.9 436 67.7
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 6.7e-137 491.5 405 69.9
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 5.0e-124 448.7 323 76.2
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 1.2e-106 391.0 328 69.2
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 1.6e-82 310.8 337 55.2
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 3.9e-76 289.7 483 44.7
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 7.3e-75 285.4 318 52.5
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 3.6e-74 283.1 438 44.5
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 8.0e-74 282.0 416 44.7
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 4.0e-73 279.6 437 44.2
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 4.0e-73 279.6 427 43.3
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 6.8e-73 278.9 340 50.6
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 1.5e-72 277.7 318 52.8
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 2.2e-71 273.9 438 44.3
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 1.7e-68 264.2 433 41.3
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 2.3e-68 263.8 337 47.5
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 2.5e-67 260.4 307 51.5
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 5.6e-67 259.2 347 47.0
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 1.1e-65 255.0 340 47.1
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 1.5e-64 251.1 241 60.2
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 1.3e-63 248.1 360 46.7
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 2.2e-63 247.3 314 47.1
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 2.1e-61 240.7 468 39.7
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 3.5e-61 240.0 394 41.1
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 6.6e-60 235.7 314 46.8
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 6.6e-60 235.7 434 37.8
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 6.6e-60 235.7 421 41.6
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.9e-59 234.2 237 56.1
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 4.3e-59 233.0 240 55.8
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 2.3e-57 227.3 454 39.6
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 6.8e-57 225.7 406 40.4
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.2e-56 224.9 376 40.4
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 2.2e-55 220.7 307 47.2
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 2.9e-55 220.3 332 44.0
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.7e-55 219.9 440 38.9
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 4.9e-55 219.5 332 43.7
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.2e-54 216.9 437 36.6
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 7.1e-54 215.7 305 45.2
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 2.7e-53 213.8 440 38.4
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 1.0e-52 211.8 355 40.8
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 1.7e-52 211.1 315 44.1
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 3.0e-52 210.3 240 52.1
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 8.9e-49 198.7 239 51.0
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 5.8e-48 196.1 170 62.4
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 2.2e-47 194.1 439 34.9
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 2.7e-45 187.2 344 38.7
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 7.8e-45 185.7 314 41.1
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 1.0e-44 185.3 344 39.8
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 1.7e-44 184.5 215 47.9
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 3.0e-44 183.7 182 54.9
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 3.3e-43 180.3 401 35.4
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 5.6e-43 179.5 452 35.0
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 8.1e-42 175.6 168 57.7
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 2.4e-41 174.1 347 35.2
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 3.1e-41 173.7 437 33.6
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 4.2e-38 163.3 314 36.6
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 9.3e-38 162.2 154 57.1
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 7.3e-35 152.5 256 40.6
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 1.3e-34 151.8 191 47.6
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 4.8e-34 149.8 167 47.9
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 4.0e-33 146.7 240 46.2
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 1.0e-28 132.1 133 53.4
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 1.4e-25 121.7 109 64.2
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 2.7e-21 107.5 290 27.9
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 2.7e-21 107.5 171 39.2
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 1.8e-20 104.8 111 58.6
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 2.3e-20 104.4 211 31.8
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 6.3e-18 96.3 132 43.9
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 2.4e-17 94.4 209 29.2
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 1.1e-14 85.5 344 28.2
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 5.7e-11 73.2 73 58.9
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 2.2e-10 71.2 151 33.1
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 9.0e-09 65.9 114 43.9
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 1.2e-08 65.5 182 28.0
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 2.6e-08 64.3 59 64.4
HanXRQChr12g0371121 Helianthus annuus HOM05D007593 ORTHO05D048270 2.9e-07 60.8 194 30.9
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 1.1e-06 58.9 91 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4242 Anthoceros agrestis HOM05D007593 ORTHO05D009686 2.5e-06 57.8 164 23.2
TAR629G0814 Trochodendron aralioides HOM05D007593 ORTHO05D009686 9.4e-06 55.8 69 50.7


User provided reference genes

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