Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 6.5e-64 247.3 130 100.0
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 3.2e-63 245.0 130 98.5
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 1.2e-62 243.0 130 97.7
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 3.1e-58 228.4 119 99.2
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 7.0e-58 227.3 119 98.3
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.2e-57 226.5 131 90.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 1.2e-57 226.5 131 90.8
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 6.6e-56 220.7 130 86.2
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 8.6e-56 220.3 130 86.2
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.1e-55 219.9 131 87.8
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 3.3e-55 218.4 131 87.0
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 9.5e-55 216.9 130 85.4
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.2e-54 216.5 130 85.4
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 6.1e-54 214.2 132 84.8
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 6.1e-54 214.2 132 84.8
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 5.2e-53 211.1 130 85.4
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 9.8e-52 206.8 119 89.1
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.9e-51 204.5 130 83.1
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 80.6
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 9.2e-50 200.3 130 82.3
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 7.8e-49 197.2 155 69.7
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.9e-48 195.3 128 78.1
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 5.0e-48 194.5 130 80.0
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 5.0e-48 194.5 130 80.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 5.0e-48 194.5 128 78.1
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 6.6e-48 194.1 130 80.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 6.6e-48 194.1 128 80.5
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.1e-47 193.4 128 78.9
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.1e-47 193.4 128 80.5
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.1e-47 193.4 128 77.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.5e-47 193.0 124 80.6
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.5e-47 193.0 123 78.0
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.9e-47 192.6 128 78.1
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 3.3e-47 191.8 128 78.9
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 3.3e-47 191.8 130 78.5
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.3e-47 191.4 128 78.9
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 5.6e-47 191.0 130 77.7
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 7.3e-47 190.7 130 77.7
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 9.5e-47 190.3 130 78.5
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.2e-46 189.9 124 78.2
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.2e-46 189.9 124 79.0
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.6e-46 189.5 130 78.5
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 2.1e-46 189.1 128 78.1
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 2.8e-46 188.7 128 77.3
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 2.8e-46 188.7 128 78.9
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 2.8e-46 188.7 130 78.5
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 3.6e-46 188.3 130 77.7
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 4.7e-46 188.0 130 76.9
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 4.7e-46 188.0 130 76.9
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 6.1e-46 187.6 130 76.9
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.1e-46 187.6 130 76.9
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.1e-46 187.6 130 76.9
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 6.1e-46 187.6 130 76.9
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 6.1e-46 187.6 130 78.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 8.0e-46 187.2 128 75.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.0e-45 186.8 128 75.8
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.0e-45 186.8 128 75.8
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-45 186.8 130 76.9
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-45 186.8 130 76.9
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-45 186.4 130 76.2
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.8e-45 186.0 130 76.9
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 1.8e-45 186.0 130 76.2
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 2.3e-45 185.7 130 76.2
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.3e-45 185.7 130 76.2
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.3e-45 185.7 130 76.2
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 2.3e-45 185.7 130 76.2
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.1e-45 185.3 130 75.4
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-45 185.3 130 75.4
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 3.1e-45 185.3 128 74.2
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 4.0e-45 184.9 130 75.4
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 4.0e-45 184.9 122 77.9
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 4.0e-45 184.9 128 74.2
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 4.0e-45 184.9 125 76.0
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 4.0e-45 184.9 130 76.9
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 5.2e-45 184.5 128 75.0
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 6.8e-45 184.1 130 75.4
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 8.9e-45 183.7 130 76.2
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 8.9e-45 183.7 130 76.2
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.2e-44 183.3 125 74.4
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.5e-44 183.0 130 73.8
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.0e-44 182.6 130 76.2
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.0e-44 182.6 130 76.9
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 2.6e-44 182.2 130 74.6
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 2.6e-44 182.2 130 74.6
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 2.6e-44 182.2 130 75.4
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 5.8e-44 181.0 122 74.6
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 5.8e-44 181.0 129 76.0
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 7.5e-44 180.6 128 72.7
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 7.5e-44 180.6 130 74.6
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 7.5e-44 180.6 122 76.2
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 7.5e-44 180.6 128 72.7
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 7.5e-44 180.6 130 73.8
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 9.8e-44 180.3 130 71.5
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.3e-43 179.9 130 75.4
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.3e-43 179.9 130 73.8
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.7e-43 179.5 130 72.3
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.2e-43 179.1 130 74.6
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.9e-43 178.7 128 74.2
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 4.9e-43 177.9 124 75.8
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 7.0e-42 174.1 130 70.0
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 9.2e-42 173.7 130 72.3
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.0e-41 172.6 130 69.2
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 3.5e-41 171.8 128 71.1
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 4.6e-41 171.4 130 69.2
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.9e-39 166.0 128 68.8
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.9e-39 166.0 128 68.8
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 2.5e-39 165.6 130 67.7
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 6.2e-38 161.0 130 65.4
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 4.4e-36 154.8 130 66.9
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.8e-36 154.5 130 64.6
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 9.8e-36 153.7 130 64.6
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 3.7e-35 151.8 128 63.3
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 4.1e-34 148.3 128 62.5
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 7.0e-34 147.5 128 62.5
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.0e-32 143.7 125 59.2
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.3e-32 142.5 147 55.8
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.2e-30 136.7 128 57.0
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 1.2e-30 136.7 128 58.6
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 2.3e-29 132.5 90 77.8
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 4.0e-29 131.7 128 57.0
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 5.8e-28 127.9 87 79.3
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.3e-27 126.7 87 75.9
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 2.2e-27 125.9 88 71.6
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.9e-26 122.9 133 51.1
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.7e-24 116.3 100 63.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.2e-20 103.6 121 45.5
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 2.3e-16 89.4 121 41.3
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 3.0e-16 89.0 121 43.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.6e-15 84.7 61 70.5
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 2.9e-11 72.4 46 80.4
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.3e-08 63.5 50 66.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 1.1e-07 60.5 38 73.7
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 1.5e-07 60.1 43 74.4
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 7.3e-07 57.8 39 66.7
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.8e-06 55.8 32 78.1
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 4.8e-06 55.1 128 32.0


User provided reference genes

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