Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 2.5e-223 778.5 401 100.0
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.8e-221 772.3 401 99.3
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 7.1e-210 733.8 398 93.2
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 7.1e-210 733.8 398 93.2
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 4.6e-209 731.1 397 92.9
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 4.3e-207 724.5 398 95.0
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 6.7e-200 700.7 399 88.2
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 6.7e-200 700.7 399 88.2
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.6e-193 679.5 402 84.8
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 4.6e-193 677.9 383 90.1
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 4.6e-193 677.9 399 85.0
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 1.8e-192 676.0 392 88.3
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 2.5e-191 672.2 402 83.1
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.4e-176 623.2 375 79.7
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 9.1e-173 610.5 397 75.6
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 2.6e-167 592.4 373 74.8
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 6.3e-166 587.8 373 76.1
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.8e-165 586.3 399 71.4
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 2.4e-165 585.9 373 75.9
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.0e-164 582.8 373 75.3
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.5e-164 582.0 372 75.3
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 2.5e-162 575.9 373 73.2
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 2.5e-162 575.9 397 70.8
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 5.5e-162 574.7 385 71.4
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 9.4e-162 573.9 381 73.0
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 1.2e-161 573.5 373 76.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 2.7e-161 572.4 402 70.4
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.1e-161 571.2 380 72.1
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 6.1e-161 571.2 373 74.0
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 5.2e-160 568.2 373 72.7
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-159 567.0 379 71.5
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.0e-159 566.2 386 71.8
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 5.7e-159 564.7 373 71.0
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.3e-158 563.5 382 70.7
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 1.8e-157 559.7 373 73.7
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.1e-157 558.9 370 72.7
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 5.3e-157 558.1 373 72.9
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.6e-156 556.6 374 70.1
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 2.0e-156 556.2 376 69.7
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 3.5e-156 555.4 391 69.3
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 1.0e-155 553.9 374 70.1
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 2.2e-155 552.7 372 73.7
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 6.5e-155 551.2 387 69.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 8.5e-155 550.8 390 69.0
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 8.5e-155 550.8 382 68.8
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.5e-154 550.1 409 65.8
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.9e-154 549.7 379 68.6
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 4.2e-154 548.5 384 68.8
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 4.2e-154 548.5 372 69.1
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 2.1e-153 546.2 372 68.8
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 2.7e-153 545.8 373 69.4
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 8.0e-153 544.3 372 69.9
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 8.0e-153 544.3 381 68.5
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.4e-152 543.5 373 69.2
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.4e-152 543.5 381 68.2
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 1.8e-152 543.1 373 73.5
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.8e-152 543.1 372 72.3
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 3.0e-152 542.3 373 70.2
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 3.0e-152 542.3 373 69.4
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 3.0e-152 542.3 372 68.5
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.2e-151 540.4 380 69.7
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.6e-151 539.3 392 66.1
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.6e-151 539.3 381 68.8
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.3e-150 537.0 408 66.7
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 3.7e-150 535.4 374 68.2
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 5.4e-149 531.6 432 60.4
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 7.0e-149 531.2 372 68.8
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.2e-148 530.4 375 68.3
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 2.2e-147 526.2 374 67.4
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 3.8e-147 525.4 378 65.6
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.9e-146 523.1 372 68.5
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.2e-146 522.3 397 64.2
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 7.2e-146 521.2 372 67.2
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 2.1e-145 519.6 372 70.7
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.0e-144 517.3 372 70.4
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 8.8e-144 514.2 372 68.8
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.5e-143 513.5 369 67.5
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.5e-143 513.5 372 69.4
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 5.7e-143 511.5 372 68.5
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 7.5e-143 511.1 372 66.4
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.8e-142 509.2 372 66.4
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 6.3e-142 508.1 432 59.5
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 1.1e-141 507.3 398 63.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.4e-141 506.1 355 70.1
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 1.1e-138 497.3 316 75.3
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 1.9e-138 496.5 382 63.6
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 7.3e-138 494.6 372 64.8
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.0e-136 490.7 316 75.0
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.9e-134 482.6 316 70.3
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.0e-131 474.2 372 63.2
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 2.3e-128 463.0 305 73.4
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 5.2e-128 461.8 376 59.8
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 9.8e-127 457.6 419 55.4
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.2e-126 456.4 356 61.8
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 6.4e-126 454.9 356 60.4
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 7.8e-124 448.0 366 59.8
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 7.8e-124 448.0 372 59.9
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.7e-123 446.8 373 63.5
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 6.2e-121 438.3 381 58.8
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 2.4e-117 426.4 380 57.4
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 5.4e-117 425.2 373 57.9
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 5.4e-117 425.2 388 55.2
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 8.6e-115 417.9 378 54.0
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 5.6e-114 415.2 274 75.2
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 5.6e-114 415.2 372 57.8
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 2.4e-109 399.8 322 64.0
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 5.4e-109 398.7 273 70.3
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.9e-106 390.2 294 64.6
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 9.6e-106 387.9 368 54.6
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 2.4e-104 383.3 378 53.2
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 3.2e-101 372.9 351 53.3
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 7.8e-100 368.2 373 53.1
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.3e-98 362.8 404 48.0
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.3e-98 362.8 404 48.0
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 3.5e-92 342.8 624 36.7
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.6e-89 334.0 372 48.9
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 4.0e-80 302.8 254 61.0
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 1.2e-71 274.6 534 37.1
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 7.6e-71 271.9 158 77.2
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 1.0e-70 271.6 158 77.2
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 3.9e-67 259.6 159 74.2
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 6.7e-67 258.8 193 65.8
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 8.5e-62 241.9 217 63.1
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.5e-55 221.1 166 67.5
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 8.5e-54 215.3 155 68.4
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.8e-51 207.6 155 64.5
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.0e-51 206.8 151 68.9
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.7e-47 192.2 121 75.2
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.7e-47 192.2 121 75.2
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.9e-46 190.3 120 74.2
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 8.2e-41 172.2 307 38.1
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 1.7e-33 147.9 341 32.0
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 9.5e-29 132.1 203 44.8
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 6.3e-25 119.4 75 68.0
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.8e-24 117.9 94 54.3
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 3.1e-24 117.1 87 64.4
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.3e-22 111.7 170 40.6
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.6e-20 104.8 325 29.2
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 4.0e-19 100.1 81 61.7
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 6.4e-17 92.8 322 25.8
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.8e-16 91.3 319 24.8
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 2.0e-15 87.8 318 24.8
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 7.8e-15 85.9 336 24.7
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 1.7e-14 84.7 339 25.4
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 6.6e-14 82.8 47 83.0
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 6.6e-14 82.8 346 23.4
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 1.1e-13 82.0 339 23.3
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 4.3e-13 80.1 327 23.5
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 1.6e-12 78.2 338 23.7
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 2.1e-12 77.8 348 23.0
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 2.1e-12 77.8 331 22.4
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 2.8e-12 77.4 339 23.3
PRCOL_00002385 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 2.8e-12 77.4 265 27.9
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 4.7e-12 76.6 355 22.3
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 6.2e-12 76.3 343 23.3
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.1e-11 75.5 345 22.9
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 2.3e-11 74.3 45 77.8
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 2.3e-11 74.3 45 77.8
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 2.3e-11 74.3 45 77.8
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 2.3e-11 74.3 340 23.5
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 4.0e-11 73.6 346 22.5
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.8e-11 72.8 340 22.6
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.8e-11 72.8 340 22.6
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.5e-10 71.6 175 32.0
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 1.5e-10 71.6 145 30.3
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 3.4e-10 70.5 337 23.4
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.4e-10 70.1 330 23.3
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 5.8e-10 69.7 337 21.7
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 5.8e-10 69.7 332 22.0
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.8e-10 68.9 336 23.5
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.9e-09 67.4 326 21.5
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 5.4e-08 63.2 73 43.8
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.6e-07 61.6 295 23.4
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 8.6e-06 55.8 179 32.4


User provided reference genes

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