Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 2061.6 1054 100.0
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1974.9 1090 94.2
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1959.1 1054 95.4
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1957.6 1054 95.5
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1956.8 1054 95.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1802.7 1062 89.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1723.4 1065 84.8
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1601.3 1077 78.5
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1593.2 1072 78.6
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 0.0e+00 1569.7 1063 78.0
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1563.5 1077 77.1
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1483.0 1015 78.1
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1321.2 1131 66.6
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 0.0e+00 1212.6 1098 62.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1198.0 1078 63.3
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1196.4 1077 63.0
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1193.7 1078 63.2
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1188.7 1090 62.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1175.6 1078 62.3
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1170.6 1079 62.6
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1170.6 1079 62.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1160.6 1079 62.2
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1159.8 1080 62.0
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1159.1 1077 62.2
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1156.4 1079 62.2
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1124.0 1076 60.3
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 3.2e-270 935.6 1124 49.8
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 4.0e-268 928.7 1113 49.3
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.3e-266 921.4 1124 49.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.1e-265 920.6 1128 48.5
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.5e-262 910.2 831 62.1
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.9e-262 909.8 1139 48.3
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 8.0e-261 904.4 1125 48.5
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 4.4e-259 898.7 1107 48.9
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.1e-257 894.0 1127 47.6
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.1e-257 892.5 1126 47.5
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.1e-257 892.5 1126 47.5
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 2.7e-256 889.4 1132 47.5
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.3e-255 887.1 1103 49.2
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.9e-255 885.9 1127 47.5
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 6.5e-255 884.8 1124 47.2
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 8.6e-255 884.4 1110 48.6
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.5e-254 883.6 1096 48.6
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 4.2e-254 882.1 1107 49.1
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 3.6e-253 879.0 1107 48.1
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.4e-252 877.1 1111 46.9
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 2.3e-252 876.3 1111 48.1
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 3.7e-250 869.0 1107 48.2
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.1e-249 865.5 1085 47.8
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 9.2e-249 864.4 1116 47.6
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1113 48.2
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.3e-247 859.8 1109 47.5
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 8.6e-247 857.8 1105 47.2
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 9.5e-246 854.4 1080 47.9
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.2e-245 854.0 1107 47.0
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 8.0e-245 851.3 1121 46.7
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.8e-244 850.1 1116 46.4
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.3e-244 849.7 1115 46.2
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 3.0e-244 849.4 1119 46.1
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 5.7e-243 845.1 1117 45.7
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1002 49.8
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 8.3e-242 841.3 1107 46.6
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 1.1e-241 840.9 1099 46.8
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.4e-241 840.5 1104 45.7
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 7.0e-241 838.2 1089 47.8
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.2e-240 837.4 1127 45.3
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.6e-240 837.0 1082 48.2
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.0e-240 836.6 993 50.9
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.7e-239 833.6 1145 46.3
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.6e-239 831.2 1143 45.1
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.6e-237 827.0 1121 45.0
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 8.0e-237 824.7 1028 48.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.4e-235 819.3 1078 46.7
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 9.8e-235 817.8 1117 45.1
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.7e-234 817.0 1117 44.9
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 2.2e-234 816.6 1124 45.3
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.5e-230 803.9 1128 45.5
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.5e-230 803.9 1095 45.1
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 7.3e-230 801.6 1182 42.4
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.6e-229 800.4 1110 43.7
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.1e-228 797.7 1087 45.9
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 2.3e-228 796.6 1138 44.2
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 7.5e-227 791.6 965 49.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.3e-226 790.8 952 50.2
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.1e-225 787.7 1139 44.2
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.2e-225 786.2 1184 42.3
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 9.2e-225 784.6 1099 45.1
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.9e-223 779.2 1113 43.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 8.6e-223 778.1 1116 43.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.3e-222 775.8 930 49.6
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 4.3e-222 775.8 1129 42.6
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.6e-221 772.7 1099 43.1
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.0e-219 766.9 1130 44.0
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.6e-219 766.5 1067 45.1
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 3.4e-219 766.1 1110 44.8
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 6.0e-216 755.4 1140 43.4
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 3.1e-212 743.0 1092 43.5
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 6.9e-212 741.9 1147 41.3
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.6e-211 740.0 1102 43.1
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 7.6e-211 738.4 1145 42.8
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 4.2e-209 732.6 1118 42.0
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 3.3e-206 723.0 1076 43.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.1e-200 703.7 1125 41.1
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 6.0e-200 702.2 886 47.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.3e-197 694.5 655 58.3
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.7e-197 693.0 1115 41.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-195 687.6 657 58.0
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 4.3e-190 669.5 658 58.2
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 9.6e-190 668.3 1129 40.9
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.2e-187 661.4 1156 39.6
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.0e-184 649.0 647 56.4
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.6e-181 641.0 504 65.9
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.5e-179 634.4 794 47.7
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.9e-177 627.5 782 49.0
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 6.3e-173 612.5 465 65.8
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 4.1e-172 609.8 538 60.0
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.2e-170 604.0 728 49.9
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.4e-167 594.7 643 54.9
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 6.3e-165 585.9 852 44.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.5e-163 581.3 895 41.7
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.5e-153 547.4 649 49.2
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 9.4e-153 545.4 892 41.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.0e-150 537.7 1116 35.8
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.0e-150 537.7 867 41.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 3.0e-143 513.8 691 47.3
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 6.1e-136 489.6 949 37.7
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 2.7e-123 447.6 676 41.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.4e-116 424.5 678 39.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.2e-116 424.1 268 78.0
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.2e-116 424.1 268 78.0
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 4.6e-99 367.1 328 56.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.9e-89 335.1 425 48.0
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.0e-83 313.5 206 75.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 3.3e-73 281.2 703 34.3
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-61 241.5 589 34.1
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.8e-61 241.1 589 34.0
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.9e-58 231.1 221 52.9
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.6e-49 201.8 142 71.1
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 1.5e-41 176.0 603 30.2
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.1e-39 169.9 192 52.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-38 166.4 140 60.7
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 3.5e-38 164.9 92 85.9
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 8.5e-37 160.2 659 26.1
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 9.4e-36 156.8 788 25.9
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 4.2e-28 131.3 159 50.3
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 7.2e-28 130.6 87 71.3
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 9.1e-23 113.6 115 56.5
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 3.8e-21 108.2 382 28.3
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 5.2e-18 97.8 113 52.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 2.0e-17 95.9 111 53.2
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 3.4e-17 95.1 109 52.3
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.8e-16 92.0 161 33.5
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 4.9e-16 91.3 67 64.2
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 5.6e-12 77.8 363 27.5
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.9e-07 62.8 162 34.0


User provided reference genes

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