Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.9e-201 705.7 368 100.0
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.5e-193 677.6 401 90.5
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 5.2e-191 671.0 368 95.9
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-190 669.5 368 95.7
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 4.9e-189 664.5 368 94.0
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 8.9e-183 643.7 398 87.4
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.8e-176 622.1 368 87.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 9.9e-166 587.0 368 83.2
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.4e-164 583.2 368 82.1
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.4e-164 581.3 383 81.2
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 7.8e-163 577.4 368 80.7
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.6e-160 568.5 369 81.3
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 5.8e-150 534.6 366 75.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.5e-147 525.4 368 75.3
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.0e-147 524.6 377 74.5
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.7e-146 520.8 368 73.9
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.9e-145 519.6 373 73.5
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 5.6e-145 518.1 368 73.4
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 8.1e-144 514.2 366 73.0
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 6.9e-143 511.1 368 73.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.5e-142 508.4 369 72.6
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.7e-138 494.2 363 71.6
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 5.6e-137 491.5 353 72.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.1e-136 489.6 372 70.4
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 2.1e-136 489.6 367 71.1
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.8e-136 489.2 367 71.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 5.3e-135 485.0 366 71.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 5.8e-134 481.5 353 71.7
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-133 479.6 377 69.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 6.4e-133 478.0 350 71.7
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 6.4e-133 478.0 369 69.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.4e-132 476.1 350 71.7
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 3.3e-129 465.7 371 68.2
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.5e-121 439.5 371 62.0
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.7e-120 435.6 371 61.2
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.8e-119 433.3 371 60.9
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.9e-116 423.3 369 60.7
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 3.2e-116 422.5 372 60.2
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 4.6e-115 418.7 369 60.4
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 3.9e-114 415.6 366 57.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 3.9e-114 415.6 372 58.3
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.9e-114 415.6 367 59.4
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 6.7e-114 414.8 372 58.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.5e-113 413.7 366 57.9
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.3e-112 410.6 380 57.6
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.8e-112 409.5 364 59.1
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.7e-112 409.1 367 58.0
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.1e-111 406.0 370 57.0
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 4.1e-111 405.6 371 58.8
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-111 405.2 366 57.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.6e-110 402.9 370 56.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.8e-109 399.1 296 72.0
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 3.6e-107 392.5 370 56.2
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 7.9e-107 391.3 370 56.5
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.4e-106 390.6 371 58.0
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.8e-106 390.2 365 56.7
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 8.8e-106 387.9 372 55.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.6e-105 386.3 369 53.7
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 9.7e-105 384.4 375 53.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.2e-104 383.3 369 55.8
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 6.3e-104 381.7 367 52.9
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.1e-103 380.9 372 54.8
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.8e-103 380.2 370 55.1
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.4e-103 379.8 367 54.2
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.0e-103 378.3 366 53.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 7.0e-103 378.3 371 53.9
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 9.1e-103 377.9 366 53.8
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 4.5e-102 375.6 366 54.1
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.9e-102 375.2 371 53.9
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 7.7e-102 374.8 370 52.4
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.7e-101 373.6 366 53.3
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.2e-101 373.2 367 54.5
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 6.5e-101 371.7 369 52.6
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 6.5e-101 371.7 369 52.6
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 6.5e-101 371.7 367 52.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 8.5e-101 371.3 367 54.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.4e-100 370.5 366 52.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.2e-100 369.0 366 54.4
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 4.2e-100 369.0 368 53.3
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 5.5e-100 368.6 368 53.8
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 7.2e-100 368.2 366 52.2
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.7e-99 366.3 368 53.8
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 4.7e-99 365.5 364 52.5
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.1e-99 365.2 367 53.7
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 8.0e-99 364.8 366 53.6
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.0e-98 364.4 381 51.4
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 5.2e-98 362.1 402 48.3
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.0e-97 360.1 370 53.0
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 2.6e-97 359.8 369 53.1
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 7.4e-97 358.2 362 49.7
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.3e-96 357.5 370 53.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.2e-96 356.7 370 51.6
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 6.3e-96 355.1 372 49.7
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.1e-95 354.4 367 53.1
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.8e-95 353.6 369 51.8
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.4e-95 353.2 369 50.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.1e-95 352.8 388 50.5
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 4.1e-95 352.4 373 51.5
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.6e-94 350.5 400 48.0
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-94 350.5 364 52.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.5e-94 349.0 365 50.1
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 7.7e-94 348.2 362 49.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.9e-93 346.3 322 58.4
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.1e-92 344.4 372 51.3
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.5e-92 344.0 311 58.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.0e-90 337.8 331 53.2
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 3.0e-90 336.3 484 42.4
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 5.2e-90 335.5 371 47.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 6.7e-90 335.1 362 48.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.4e-89 332.4 370 50.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 9.7e-89 331.3 376 48.1
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.7e-88 330.5 317 57.1
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.1e-87 327.8 506 40.5
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 7.0e-87 325.1 369 48.0
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 9.1e-87 324.7 394 45.4
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.1e-84 317.8 286 57.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.1e-84 317.8 354 49.2
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.9e-84 317.0 295 57.3
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 3.2e-84 316.2 368 49.5
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.2e-83 314.3 317 55.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.5e-81 307.4 371 44.5
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.4e-81 306.2 319 52.4
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 7.5e-81 305.1 362 44.8
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.5e-78 296.2 374 44.9
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.0e-77 294.7 314 51.6
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.3e-77 294.3 310 50.3
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 7.2e-76 288.5 559 37.2
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 7.2e-76 288.5 371 45.0
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.0e-74 284.6 366 45.1
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-65 252.7 211 63.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.1e-63 246.1 209 60.8
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 9.2e-63 245.0 471 33.3
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 3.5e-62 243.0 210 59.5
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.7e-59 232.6 228 52.6
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 4.0e-58 229.6 207 56.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.5e-57 227.6 318 39.9
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.7e-56 223.0 310 41.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.1e-55 219.5 171 67.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.2e-54 218.0 376 35.9
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.6e-54 216.1 171 67.3
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.8e-54 215.3 171 67.3
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-53 214.5 204 55.4
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.7e-53 214.2 339 38.1
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.6e-53 211.8 302 43.7
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-52 211.5 204 54.4
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-52 210.7 156 68.6
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.3e-52 209.9 171 65.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.1e-51 207.2 202 54.5
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.2e-51 205.7 165 64.2
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 7.5e-49 198.7 162 61.7
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.3e-48 195.3 171 63.2
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.1e-45 186.0 377 34.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 3.3e-44 183.3 369 32.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.3e-44 183.3 374 33.2
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 5.6e-44 182.6 306 39.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-43 181.4 226 52.2
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.2e-43 181.4 156 59.0
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-42 178.3 374 31.6
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.0e-42 176.4 376 32.4
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.9e-37 159.8 257 38.5
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.3e-36 155.6 130 63.1
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 6.2e-35 152.5 200 38.5
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.4e-33 146.4 370 27.6
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-32 144.8 159 47.8
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.2e-32 144.1 156 48.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 3.2e-31 140.2 156 46.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-30 137.5 154 53.9
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.6e-30 136.3 104 69.2
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.0e-29 135.2 126 54.0
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.3e-28 129.8 134 50.0
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 8.4e-24 115.5 173 37.6
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 9.3e-23 112.1 130 43.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.3e-21 108.2 137 45.3
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 5.1e-21 106.3 137 43.1
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 6.4e-16 89.4 259 27.4
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.3e-12 76.6 303 25.7
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 2.9e-08 63.9 225 24.0


User provided reference genes

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