Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2134.8 1073 100.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2102.0 1073 98.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 2098.2 1074 98.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2095.9 1073 98.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 2095.1 1074 98.5
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2028.4 1081 95.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1952.2 1087 90.5
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1909.4 1083 90.0
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1906.3 1084 88.9
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1903.3 1082 88.7
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1892.5 1083 88.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1829.7 1087 84.7
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1822.4 1083 84.9
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1819.3 1087 84.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1812.7 1086 84.4
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1812.3 1087 83.9
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1803.1 1083 84.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1799.3 1083 83.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1799.3 1087 83.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1798.9 1093 83.0
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1795.4 1073 83.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1794.6 1083 83.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1794.2 1083 83.6
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1793.1 1083 83.3
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1788.1 1081 83.3
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1786.9 1083 83.5
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1781.1 1088 82.9
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1778.5 1089 82.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1775.8 1092 82.1
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1771.5 1085 82.8
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1759.6 1142 78.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1681.8 1085 77.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1090 76.9
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1090 76.9
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1084 76.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1658.3 1090 76.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1089 76.9
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1090 76.1
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1074 77.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1016 79.1
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1031 79.3
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1077 76.8
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1088 76.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1069 76.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1087 76.4
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1121 74.3
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1084 76.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1095 75.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1085 75.9
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1078 75.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1634.8 1088 76.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1634.4 1078 75.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1630.5 1089 75.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1088 76.1
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1070 76.2
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1066 76.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1624.0 992 80.1
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1624.0 1093 75.8
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1084 74.7
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1620.9 1096 74.6
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1080 75.8
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1090 75.9
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1043 76.2
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1082 74.1
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1610.5 987 79.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1610.1 1175 70.7
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 986 79.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1006 77.1
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1602.0 1089 73.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1089 74.8
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 1088 73.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1600.1 1087 74.4
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1004 78.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1043 76.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1084 73.7
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1585.5 1087 74.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1585.1 1022 76.2
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1584.7 987 77.8
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1083 73.2
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1078 73.9
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1579.3 1087 73.0
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1579.3 1063 73.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1579.3 1073 73.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1577.4 987 76.9
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1573.5 987 77.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1570.8 1072 72.8
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1081 72.5
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1569.3 985 77.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 1069 73.0
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1567.0 1071 74.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1565.8 1081 72.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1565.4 1082 72.5
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1103 72.3
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1555.8 1061 72.4
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1554.7 1082 71.8
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1554.7 1009 74.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1548.9 1078 72.3
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1548.9 1077 72.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1531.5 1034 73.1
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1525.0 1077 71.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1518.4 1077 71.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1515.4 1113 69.7
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1502.3 1167 67.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1501.5 1195 64.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1481.8 1078 69.5
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1460.7 969 73.5
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1453.0 1118 68.1
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1437.9 919 76.3
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1427.5 1080 68.8
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1415.2 874 78.8
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1406.3 1022 67.1
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1389.0 1004 69.8
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1367.8 1030 64.9
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1331.2 962 66.9
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1302.0 722 90.7
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1296.6 1094 63.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1295.8 1094 63.3
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1281.5 801 77.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1241.5 1004 62.5
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1161.0 1060 58.1
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1138.3 850 68.5
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1115.1 748 73.9
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1113.6 986 55.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1104.0 750 75.2
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1101.7 1064 53.1
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1087.4 988 55.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.3e-287 992.6 739 67.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-273 946.4 885 56.2
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.3e-258 897.1 774 57.8
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.1e-256 889.8 877 55.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.1e-255 885.2 584 73.5
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-251 872.8 596 73.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-241 840.9 972 45.1
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.0e-211 740.3 671 56.0
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 5.4e-196 689.1 642 57.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.7e-192 676.0 704 51.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 8.3e-181 638.6 452 71.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.0e-170 603.6 415 72.3
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.5e-169 600.5 532 60.2
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.0e-162 577.0 423 70.9
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.7e-160 569.7 498 63.7
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.3e-154 551.6 338 81.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.6e-152 544.7 1045 35.7
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 8.7e-146 522.3 393 63.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.8e-144 517.3 478 61.3
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-131 475.3 397 61.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 7.2e-124 449.5 309 70.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.8e-120 436.8 324 65.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 7.2e-116 422.9 398 58.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.7e-104 384.0 1007 28.6
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.0e-102 378.3 970 29.3
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.9e-102 376.7 952 28.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 7.2e-100 369.8 227 78.9
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.3e-97 360.9 276 70.7
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.0e-90 337.4 915 29.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.6e-76 290.4 159 85.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 9.9e-57 226.5 222 54.1
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.6e-54 217.6 846 23.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 6.2e-51 207.2 335 34.3
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-49 202.6 310 42.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.2e-43 183.0 220 51.4
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 3.6e-43 181.4 124 73.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 9.9e-41 173.3 151 57.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.3e-39 166.8 125 64.0
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 3.0e-37 161.8 154 55.8
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.5e-36 159.5 278 36.7
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.3e-36 157.9 149 55.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 7.6e-33 147.1 467 25.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.2e-32 145.6 134 59.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-30 139.8 181 40.9
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.5e-25 122.9 111 55.0
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 5.8e-25 120.9 435 25.5
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-20 105.9 74 68.9
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.0e-18 98.2 151 48.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.3e-15 87.0 83 55.4
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.7e-12 77.8 54 63.0
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.2e-11 75.9 138 39.1
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.1e-10 73.6 51 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 8.5e-08 63.9 73 50.7
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.9e-07 62.8 36 75.0
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.9e-07 62.8 45 64.4
A02p03970 Brassica napus HOM05D018909 ORTHO05D016798 9.4e-07 60.5 52 71.2
A05p09840 Brassica napus HOM05D018909 ORTHO05D016798 9.4e-07 60.5 52 71.2
A03p60340 Brassica napus HOM05D037741 ORTHO05D016798 2.7e-06 58.9 52 71.2


User provided reference genes

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