Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 2.1e-166 589.0 305 100.0
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 4.6e-161 571.2 307 98.0
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 8.2e-158 560.5 302 96.7
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 3.1e-157 558.5 302 96.4
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 1.5e-156 556.2 302 96.4
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 4.7e-145 518.1 303 90.4
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 7.4e-143 510.8 303 89.1
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 7.4e-143 510.8 303 89.1
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 1.8e-141 506.1 307 87.6
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 2.9e-139 498.8 307 86.6
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 1.9e-138 496.1 307 86.3
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.4e-117 426.0 233 92.3
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.1e-117 425.2 299 76.3
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.5e-116 421.8 303 75.6
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 1.3e-107 393.7 220 91.8
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 2.2e-102 376.3 285 67.0
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 5.4e-101 371.7 302 66.2
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 6.0e-100 368.2 298 65.8
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 6.0e-100 368.2 294 65.3
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 1.0e-99 367.5 288 66.7
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.3e-99 367.1 293 64.8
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.7e-99 366.7 288 66.3
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 3.9e-99 365.5 297 66.7
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 5.0e-99 365.2 282 66.0
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 6.6e-99 364.8 283 66.8
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.1e-98 364.0 277 68.2
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.9e-98 363.2 297 63.3
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 3.3e-98 362.5 293 64.8
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 7.3e-98 361.3 303 62.4
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 1.2e-97 360.5 273 67.4
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 3.6e-97 359.0 277 66.1
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 4.7e-97 358.6 281 66.2
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 6.2e-97 358.2 209 87.6
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.1e-96 357.5 282 64.5
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.1e-96 355.9 285 63.5
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 4.0e-96 355.5 283 65.7
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 5.2e-96 355.1 288 66.3
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 8.9e-96 354.4 260 68.5
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.5e-95 353.6 281 65.8
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 2.0e-95 353.2 299 61.5
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 2.6e-95 352.8 304 62.2
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 3.4e-95 352.4 284 64.1
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 3.4e-95 352.4 299 61.5
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 1.7e-94 350.1 274 65.0
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 8.3e-94 347.8 295 63.1
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 8.3e-94 347.8 292 61.6
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 2.4e-93 346.3 277 62.8
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 5.4e-93 345.1 266 66.5
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 9.2e-93 344.4 282 64.9
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 9.2e-93 344.4 301 60.8
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 1.6e-92 343.6 285 63.5
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 2.1e-92 343.2 295 60.7
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.7e-92 342.8 271 66.1
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 6.0e-92 341.7 270 65.6
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 1.0e-91 340.9 293 61.1
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 2.3e-91 339.7 293 59.7
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 2.3e-91 339.7 283 64.7
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 3.9e-91 339.0 231 71.4
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 3.9e-91 339.0 286 62.6
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 3.9e-91 339.0 295 60.0
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 5.1e-91 338.6 263 65.0
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 5.1e-91 338.6 333 54.4
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.1e-90 337.4 230 70.4
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 2.5e-90 336.3 231 71.9
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.2e-89 334.0 231 71.4
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 1.4e-88 330.5 285 62.1
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.8e-88 330.1 231 69.7
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 1.8e-88 330.1 277 62.1
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 8.9e-88 327.8 232 69.0
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.2e-87 327.4 274 63.9
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 2.0e-87 326.6 274 63.5
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.6e-87 326.2 268 63.1
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 9.9e-87 324.3 264 61.7
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 2.2e-86 323.2 260 64.6
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.4e-85 320.5 256 62.5
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 9.2e-85 317.8 282 59.2
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 3.5e-84 315.8 265 58.9
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 4.6e-84 315.5 229 65.9
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 3.9e-83 312.4 291 58.8
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 6.6e-83 311.6 311 54.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.3e-82 308.9 271 60.9
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 8.1e-81 304.7 256 59.8
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 8.9e-80 301.2 261 59.8
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.3e-78 297.4 218 68.3
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.2e-77 292.7 204 71.1
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 7.1e-77 291.6 298 54.4
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.6e-73 280.4 262 58.0
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.1e-73 280.0 167 85.0
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 2.8e-73 279.6 206 67.5
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 3.6e-73 279.3 236 62.7
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 3.8e-70 269.2 207 67.1
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 7.9e-68 261.5 254 53.5
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 4.0e-64 249.2 183 65.0
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 9.9e-63 244.6 198 65.2
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 4.9e-62 242.3 191 62.3
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 6.4e-62 241.9 257 49.4
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 2.4e-61 240.0 218 59.2
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 4.6e-60 235.7 264 46.2
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 7.9e-60 235.0 297 47.1
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 3.4e-55 219.5 256 46.9
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 1.4e-53 214.2 266 44.0
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 5.5e-45 185.7 134 67.9
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.3e-43 181.0 282 40.1
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.7e-41 174.1 294 42.2
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.1e-40 169.9 103 88.3
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 2.8e-33 146.7 169 47.9
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 3.2e-29 133.3 106 61.3
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 3.5e-23 113.2 102 55.9
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 2.7e-20 103.6 333 28.8
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 3.6e-20 103.2 204 37.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.3e-14 84.7 102 46.1
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 1.3e-14 84.7 102 46.1
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 1.9e-13 80.9 83 59.0
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 2.7e-12 77.0 49 75.5
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 4.7e-12 76.3 49 73.5
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 4.7e-12 76.3 49 73.5
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 4.7e-12 76.3 49 73.5
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 4.0e-11 73.2 46 73.9
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.7e-07 60.5 52 59.6


User provided reference genes

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