Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.3e-114 416.4 213 100.0
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.5e-113 412.1 213 99.1
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 8.1e-112 407.1 213 97.2
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 8.1e-112 407.1 213 97.2
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.4e-111 406.4 213 97.2
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.4e-111 405.6 213 97.2
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 2.9e-93 345.5 217 86.2
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 7.1e-92 340.9 216 85.6
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 3.5e-91 338.6 217 84.3
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 6.7e-90 334.3 219 86.3
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 9.6e-89 330.5 215 86.0
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.8e-87 326.2 216 82.9
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.0e-86 322.8 219 83.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.3e-85 320.1 216 82.4
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.4e-84 316.6 216 83.3
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.5e-84 315.8 216 81.9
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.2e-68 262.3 216 68.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 6.1e-67 258.1 152 86.8
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 6.5e-61 238.0 144 88.9
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.9e-52 209.9 222 56.8
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.3e-50 203.0 224 54.5
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 5.2e-50 201.8 223 54.3
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 8.8e-50 201.1 218 54.6
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 8.8e-50 201.1 218 54.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 2.6e-49 199.5 213 53.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.3e-49 199.1 182 58.8
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.5e-49 198.0 218 53.7
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.5e-49 198.0 204 55.9
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.3e-48 197.2 185 56.8
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-48 196.4 216 53.7
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.7e-48 195.7 182 58.8
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 4.8e-48 195.3 213 51.6
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 6.3e-48 194.9 188 58.5
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.1e-47 194.1 159 62.3
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.1e-47 192.6 159 61.6
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 3.1e-47 192.6 189 56.6
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 4.1e-47 192.2 214 56.1
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.1e-47 192.2 204 54.4
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 5.3e-47 191.8 216 55.6
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 5.3e-47 191.8 210 51.4
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 5.3e-47 191.8 163 63.8
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 9.1e-47 191.0 227 49.8
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.6e-46 190.3 200 57.0
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.0e-46 189.9 228 53.5
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 2.0e-46 189.9 197 57.4
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.5e-46 189.1 213 54.0
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 7.7e-46 188.0 216 49.5
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 7.7e-46 188.0 183 57.9
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.7e-46 188.0 202 53.0
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.0e-45 187.6 155 62.6
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.3e-45 187.2 160 62.5
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.3e-45 187.2 188 56.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.3e-45 187.2 158 60.8
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.7e-45 186.8 156 64.7
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.7e-45 186.8 217 51.2
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.7e-45 186.8 158 65.8
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.9e-45 186.0 158 62.0
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.9e-45 186.0 156 62.8
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.5e-45 184.9 159 61.0
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 6.5e-45 184.9 224 54.0
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 6.5e-45 184.9 217 51.2
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 8.5e-45 184.5 217 49.3
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.1e-44 184.1 220 49.5
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 1.1e-44 184.1 191 51.8
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.5e-44 183.7 181 56.9
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.5e-44 183.7 163 61.3
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-44 183.7 160 58.1
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-44 183.7 162 61.7
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.9e-44 183.3 154 62.3
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 2.5e-44 183.0 191 55.0
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 3.2e-44 182.6 189 54.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 3.2e-44 182.6 159 59.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.2e-44 182.2 197 53.8
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 5.5e-44 181.8 159 59.1
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 7.2e-44 181.4 158 60.8
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 7.2e-44 181.4 152 65.8
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 7.2e-44 181.4 213 54.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.6e-43 180.3 209 51.7
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.6e-43 180.3 213 51.6
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.1e-43 179.9 178 56.7
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.1e-43 179.9 163 59.5
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 2.1e-43 179.9 222 49.1
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.7e-43 179.5 199 51.3
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 3.6e-43 179.1 203 50.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 4.7e-43 178.7 222 47.7
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 6.1e-43 178.3 242 49.2
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 6.1e-43 178.3 196 51.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 6.1e-43 178.3 184 54.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 8.0e-43 177.9 189 52.9
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.4e-42 177.2 218 48.6
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 3.0e-42 176.0 180 55.6
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.2e-42 175.3 159 59.1
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 5.2e-42 175.3 152 61.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 8.8e-42 174.5 221 49.3
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.5e-41 173.7 213 50.7
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.0e-41 173.3 211 51.7
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-41 172.9 182 55.5
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-41 172.9 182 55.5
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 3.4e-41 172.6 154 62.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.4e-41 172.6 178 55.6
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.7e-40 169.1 170 56.5
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 8.3e-40 167.9 151 56.3
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 3.1e-39 166.0 188 48.4
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 7.0e-39 164.9 189 49.2
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 3.5e-38 162.5 153 56.2
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 8.5e-37 157.9 139 59.7
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.5e-36 156.4 172 51.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 8.0e-35 151.4 191 42.9
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.0e-34 151.0 145 57.9
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 5.2e-34 148.7 150 53.3
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.2e-33 147.5 151 52.3
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 4.4e-33 145.6 155 52.3
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 4.9e-32 142.1 159 54.1
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 4.9e-32 142.1 140 51.4
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.1e-31 141.0 142 54.2
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 9.5e-28 127.9 144 51.4
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 1.6e-27 127.1 213 42.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.6e-27 127.1 201 39.8
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.8e-27 126.3 116 61.2
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 6.1e-27 125.2 180 46.1
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.0e-26 124.4 113 63.7
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 5.2e-26 122.1 145 50.3
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 6.8e-26 121.7 149 46.3
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.2e-25 120.9 191 42.4
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 3.2e-23 112.8 163 42.9
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 5.4e-23 112.1 81 65.4
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 3.5e-22 109.4 108 57.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.9e-20 103.6 209 37.3
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 2.3e-18 96.7 97 57.7
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 4.0e-18 95.9 145 41.4
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.7e-16 89.4 53 86.8
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.4e-15 86.7 116 48.3
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 9.2e-15 84.7 148 39.2
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.9e-13 79.3 86 52.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 8.6e-13 78.2 82 57.3
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-13 78.2 71 53.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 1.9e-12 77.0 196 32.1
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 3.3e-12 76.3 80 55.0
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 5.6e-12 75.5 113 42.5
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 2.1e-11 73.6 79 55.7
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.1e-11 73.6 200 34.5
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 3.6e-11 72.8 82 53.7
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 3.1e-10 69.7 83 53.0
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.2e-09 67.8 85 47.1
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 5.8e-09 65.5 118 42.4
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 7.1e-07 58.5 136 33.1
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 4.6e-06 55.8 130 30.8
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.8e-06 55.1 34 73.5
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 7.8e-06 55.1 32 71.9


User provided reference genes

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