Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 0.0e+00 1090.5 548 100.0
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 4.8e-302 1040.4 548 96.2
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 6.1e-297 1023.5 548 94.5
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.8e-296 1021.9 548 94.5
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 3.4e-295 1017.7 548 94.2
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.9e-266 922.2 548 86.9
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 6.2e-265 917.1 548 87.0
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 3.1e-264 914.8 550 86.7
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 6.8e-264 913.7 549 86.2
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 1.4e-261 906.0 551 85.7
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 7.1e-261 903.7 550 85.8
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 7.8e-260 900.2 594 80.1
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.9e-253 879.0 548 82.5
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 6.0e-244 847.4 548 80.5
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 1.8e-243 845.9 548 80.1
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 4.3e-242 841.3 548 80.3
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 3.2e-237 825.1 549 78.7
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 1.1e-234 816.6 573 75.6
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 5.3e-216 754.6 554 71.8
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 5.6e-173 611.7 555 59.6
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 9.5e-173 610.9 555 57.7
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.6e-172 610.1 555 59.5
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 8.0e-172 607.8 557 60.1
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 7.5e-170 601.3 555 58.6
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 2.9e-169 599.4 558 59.1
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 3.7e-169 599.0 557 58.3
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.9e-168 596.7 555 58.6
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 3.2e-168 595.9 334 91.3
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.6e-167 593.6 545 57.1
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 3.5e-167 592.4 554 59.7
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.9e-166 589.0 573 55.7
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 6.6e-166 588.2 556 58.3
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 9.5e-165 584.3 563 58.8
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 9.5e-165 584.3 560 55.7
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 6.2e-164 581.6 562 56.0
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.4e-163 580.5 543 56.0
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 4.0e-163 578.9 546 57.3
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 2.2e-161 573.2 546 55.9
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 3.2e-160 569.3 550 54.9
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 7.1e-160 568.2 558 55.7
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.1e-159 566.6 542 55.5
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 2.1e-159 566.6 557 56.4
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 2.7e-159 566.2 519 58.4
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 3.5e-159 565.8 542 55.4
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 4.6e-159 565.5 501 59.5
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 6.0e-159 565.1 560 56.4
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.3e-158 563.9 542 55.5
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 2.3e-158 563.1 555 54.6
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.0e-158 562.8 542 55.2
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 3.0e-158 562.8 551 55.4
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.1e-158 562.0 542 55.4
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.1e-158 562.0 543 55.8
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.6e-158 561.6 552 56.2
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.5e-157 560.5 554 56.1
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.5e-157 559.7 542 55.4
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.2e-156 557.4 552 53.6
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.6e-156 557.0 565 53.5
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.8e-155 553.5 564 54.1
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 5.2e-155 552.0 566 54.2
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.2e-154 550.8 552 54.3
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.5e-154 550.4 559 55.5
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 5.8e-154 548.5 529 56.7
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 7.6e-154 548.1 571 54.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 7.6e-154 548.1 563 54.5
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 4.9e-153 545.4 526 54.8
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 8.4e-153 544.7 549 52.6
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.9e-152 543.5 556 52.5
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 2.4e-152 543.1 560 53.8
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 5.4e-152 542.0 551 54.3
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 7.1e-152 541.6 537 54.2
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 2.7e-151 539.7 559 52.6
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 1.7e-150 537.0 559 52.2
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.3e-150 536.6 559 52.2
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.1e-149 534.3 517 56.1
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 3.3e-149 532.7 567 52.0
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 7.3e-149 531.6 512 56.6
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 2.8e-148 529.6 487 58.3
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 4.7e-148 528.9 557 52.4
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 4.7e-148 528.9 534 54.9
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.4e-147 526.6 558 52.7
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 3.1e-147 526.2 556 51.4
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 8.4e-145 518.1 585 49.7
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 8.4e-145 518.1 554 52.9
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.9e-144 516.9 573 50.8
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.5e-143 512.7 563 51.5
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.5e-141 507.3 559 51.2
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.5e-141 507.3 550 51.5
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 1.6e-140 503.8 521 52.0
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 1.1e-139 501.1 567 51.9
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 1.4e-139 500.7 536 53.4
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 9.0e-139 498.0 702 43.7
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.4e-137 491.9 552 51.3
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.4e-136 490.0 580 49.1
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.7e-135 486.5 552 48.0
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.5e-133 480.7 473 53.3
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 1.3e-132 477.6 551 49.0
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 6.9e-131 471.9 535 52.7
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 9.3e-128 461.5 557 49.6
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.7e-127 459.9 426 57.7
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 6.7e-126 455.3 453 54.3
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.3e-121 441.0 558 45.9
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 3.2e-120 436.4 559 47.0
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.2e-119 434.5 523 47.0
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 4.3e-117 426.0 480 51.7
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.1e-115 419.9 570 44.0
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.9e-110 402.9 706 40.5
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.2e-100 370.5 369 59.1
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.8e-99 367.5 380 53.2
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 9.7e-93 345.1 546 38.6
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 5.3e-91 339.3 328 56.7
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 9.4e-88 328.6 320 58.4
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 1.6e-87 327.8 549 37.2
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 3.0e-86 323.6 355 53.5
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 4.4e-85 319.7 397 48.6
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.2e-82 311.6 543 39.0
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.2e-82 311.6 545 37.8
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 5.5e-80 302.8 370 50.5
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 7.5e-77 292.4 546 35.5
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.0e-74 284.3 347 48.1
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 5.0e-73 279.6 369 46.3
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.6e-69 267.3 149 89.9
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 2.2e-68 264.2 402 42.0
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.1e-67 260.4 341 47.5
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.6e-63 248.1 169 77.5
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.8e-54 218.0 201 50.7
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.0e-45 188.0 179 48.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.4e-45 186.8 523 29.8
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 8.3e-44 182.6 160 59.4
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.1e-43 182.2 144 66.0
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.9e-43 181.4 142 66.2
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 3.2e-43 180.6 152 59.9
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 6.2e-39 166.4 212 42.5
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.5e-32 145.2 114 63.2
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.3e-32 144.1 83 81.9
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 2.3e-25 121.3 112 58.0
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 6.9e-22 109.8 125 48.0
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.8e-21 106.7 99 50.5
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 4.9e-20 103.6 139 42.4
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 2.7e-18 97.8 125 41.6
BcaB07g33467 Brassica carinata HOM05D004567 ORTHO05D005726 6.9e-14 83.2 56 76.8
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.0e-13 81.6 102 41.2
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.6e-13 81.3 84 56.0
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.8e-13 80.1 81 51.9
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 4.9e-12 77.0 102 39.2
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 4.2e-11 73.9 74 45.9
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.5e-11 73.6 89 44.9
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 6.7e-09 66.6 80 41.2
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.9e-08 65.1 89 39.3
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 3.7e-07 60.8 73 42.5
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 1.4e-06 58.9 53 49.1
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 6.9e-06 56.6 152 35.5


User provided reference genes

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