Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1157.5 562 100.0
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 0.0e+00 1146.7 562 98.9
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 0.0e+00 1138.6 562 98.2
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 0.0e+00 1121.7 562 95.9
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 0.0e+00 1077.0 562 94.1
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 8.5e-310 1066.2 521 98.7
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.6e-308 1060.8 562 89.5
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 7.9e-308 1059.7 562 89.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.1e-306 1055.8 562 89.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 88.8
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 88.8
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 88.8
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 88.8
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 562 88.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 4.8e-305 1050.4 562 87.7
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 562 87.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 562 87.5
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 562 87.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 562 87.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 562 87.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 562 87.0
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 562 87.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 6.5e-302 1040.0 562 87.4
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 5.5e-301 1036.9 562 86.8
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 564 85.1
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 562 84.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.4e-288 995.7 564 84.6
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 84.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.6e-287 992.3 561 84.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.6e-287 992.3 565 83.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.0e-287 991.9 564 84.8
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.5e-287 991.1 565 83.4
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.0e-286 989.6 562 83.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.2e-286 988.4 562 83.6
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.9e-286 988.0 564 83.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 8.5e-286 986.5 565 83.5
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.9e-285 985.3 565 83.4
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.5e-285 984.9 564 83.7
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.2e-285 984.6 565 83.5
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 4.2e-285 984.2 564 82.6
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 7.2e-285 983.4 564 83.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 9.4e-285 983.0 564 83.9
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 9.4e-285 983.0 558 84.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 2.7e-284 981.5 564 82.8
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.6e-284 981.1 565 83.5
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.6e-284 981.1 565 83.9
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.0e-283 979.5 564 83.0
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.0e-283 979.5 562 82.4
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.4e-283 979.2 565 83.4
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.8e-283 978.8 564 83.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 83.2
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 3.0e-283 978.0 562 83.1
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 4.0e-283 977.6 564 83.2
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 5.2e-283 977.2 564 83.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 6.8e-283 976.9 564 83.2
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 82.4
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 81.7
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 81.7
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 5.7e-282 973.8 564 81.9
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 7.5e-282 973.4 564 83.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 9.7e-282 973.0 564 83.0
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 82.1
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.7e-281 972.2 567 82.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.2e-281 971.8 565 81.8
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.2e-281 971.8 565 81.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.7e-281 971.1 564 81.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 4.8e-281 970.7 564 82.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.8e-280 968.8 561 81.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.8e-280 968.8 565 82.7
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 82.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 82.8
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.1e-280 968.0 564 81.2
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.1e-280 967.6 565 82.3
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 5.3e-280 967.2 564 82.3
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.6e-279 965.7 563 81.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.0e-279 965.3 564 81.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.9e-279 963.8 562 81.5
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 7.7e-279 963.4 564 82.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.3e-278 962.6 562 81.1
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.3e-278 962.6 563 81.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.2e-278 961.8 564 81.7
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.8e-278 961.1 556 81.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.8e-278 961.1 563 81.0
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.6e-276 954.5 562 79.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.0e-275 953.0 564 81.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.8e-275 952.2 564 80.3
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.3e-275 951.8 564 79.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 3.0e-275 951.4 551 82.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 4.0e-275 951.0 559 80.7
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.8e-275 950.3 559 80.3
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 8.8e-275 949.9 562 79.9
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.0e-274 948.7 563 80.3
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.6e-274 948.3 564 80.1
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.4e-274 948.0 562 79.4
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.3e-273 946.0 561 79.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.3e-273 946.0 559 80.0
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.8e-273 944.9 562 79.7
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 8.3e-273 943.3 553 80.3
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.4e-272 941.8 564 79.6
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.4e-272 941.8 564 79.3
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.0e-272 940.3 550 81.3
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 9.1e-272 939.9 551 81.5
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-271 939.1 553 80.1
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.5e-271 937.9 550 81.3
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.3e-270 935.3 568 79.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 2.9e-270 934.9 564 79.8
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 7.2e-269 930.2 551 79.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.5e-269 929.9 566 79.3
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 9.5e-269 929.9 563 78.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.1e-268 928.7 566 79.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.8e-268 928.3 553 79.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.7e-268 927.5 566 79.2
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 3.4e-266 921.4 561 79.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.7e-265 917.9 562 76.2
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.4e-264 916.0 566 78.4
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.4e-264 916.0 562 76.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.5e-263 911.4 534 80.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.7e-262 909.1 562 75.4
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.3e-261 903.7 564 76.2
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.2e-260 902.9 553 77.4
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 6.4e-257 890.6 552 76.1
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-255 886.3 565 77.2
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.2e-255 886.3 559 74.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 7.8e-255 883.6 554 75.1
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.0e-254 881.7 554 74.5
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.9e-253 879.0 562 74.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 1.4e-251 872.8 564 71.8
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.5e-250 869.4 553 74.7
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 7.1e-248 860.5 570 70.9
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.6e-247 857.8 561 72.4
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.6e-247 857.8 562 72.4
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 8.1e-244 847.0 562 71.9
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.2e-241 839.0 562 70.8
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.8e-236 822.0 562 70.3
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 5.2e-235 817.8 565 69.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.2e-234 816.6 558 73.3
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.3e-233 813.1 565 69.6
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.4e-227 793.1 466 78.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 4.8e-212 741.5 425 84.7
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.6e-199 698.4 425 77.9
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.3e-197 691.8 562 63.2
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.0e-194 682.9 561 61.9
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-176 624.0 373 77.7
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 9.1e-171 604.4 545 54.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 5.5e-160 568.5 526 50.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.0e-158 562.8 330 79.1
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.3e-156 555.1 418 67.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 5.4e-155 552.0 488 52.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 6.4e-148 528.5 293 82.3
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.9e-140 502.3 418 57.4
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.4e-131 473.4 315 72.4
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.8e-127 459.9 550 47.3
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.2e-126 455.7 557 47.0
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.6e-125 451.8 466 54.1
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-113 414.8 546 47.6
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 9.9e-101 371.7 214 85.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 7.9e-82 308.9 154 94.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 8.7e-81 305.4 154 92.9
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.6e-79 301.2 489 35.8
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-65 254.6 166 72.3
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.1e-50 203.0 117 82.9
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.8e-46 191.4 133 72.9
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-44 184.9 166 60.8
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.5e-44 183.0 166 60.8
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.5e-44 182.6 128 72.7
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-43 182.2 166 60.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 7.2e-43 179.5 117 70.1
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-42 178.7 166 60.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.5e-35 155.2 314 31.2
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.4e-32 144.1 210 42.4
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.9e-31 140.2 493 25.4
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.5e-29 134.0 87 69.0
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.5e-27 128.6 90 64.4
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-25 122.1 180 43.9
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.2e-24 119.0 59 88.1
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.5e-24 118.6 76 67.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.1e-22 112.5 85 60.0
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 9.2e-22 109.4 166 42.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 6.0e-13 80.1 46 71.7
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-06 59.3 31 83.9
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-06 59.3 31 83.9
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 4.1e-06 57.4 31 80.6
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.4e-06 57.0 40 75.0


User provided reference genes

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