Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 6.3e-241 837.0 425 100.0
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.8e-240 835.5 425 99.8
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.1e-236 822.0 425 98.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.1e-236 822.0 425 98.1
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.3e-235 818.5 433 96.5
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 8.3e-233 810.1 432 95.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.7e-217 759.2 432 90.3
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.5e-213 746.1 432 88.9
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 7.3e-213 743.8 432 89.1
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.6e-212 741.5 432 87.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 8.0e-212 740.3 432 87.7
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.3e-201 706.4 426 85.9
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.3e-182 643.3 432 78.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 4.2e-176 621.7 419 74.5
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.4e-176 621.3 420 73.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 9.3e-176 620.5 433 70.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.2e-175 620.2 434 73.0
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.2e-175 620.2 406 75.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 2.1e-175 619.4 398 76.6
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.3e-174 616.7 420 74.3
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.3e-174 616.7 433 71.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.8e-174 616.3 433 71.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.3e-174 615.9 429 72.7
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 2.3e-174 615.9 432 71.8
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 5.1e-174 614.8 417 74.3
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.9e-173 612.8 430 73.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.9e-173 612.8 421 72.9
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-173 612.5 429 72.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.5e-173 612.5 420 73.3
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.3e-173 612.1 400 76.0
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.3e-173 612.1 421 73.2
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 7.4e-173 610.9 420 73.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 9.6e-173 610.5 400 76.0
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 3.7e-172 608.6 424 71.5
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.7e-172 608.6 420 72.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 4.8e-172 608.2 428 71.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 4.8e-172 608.2 419 72.6
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.1e-171 607.1 426 72.1
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.4e-171 605.9 421 72.0
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.1e-171 605.5 426 71.8
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 6.9e-171 604.4 399 75.2
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 9.0e-171 604.0 459 67.8
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.2e-170 603.6 421 71.7
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.3e-169 600.1 433 69.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-169 600.1 420 71.7
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.2e-169 599.4 433 70.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.9e-169 599.0 435 70.6
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.4e-168 595.9 400 72.5
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.2e-168 595.5 400 73.5
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.2e-168 595.1 411 72.5
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 5.5e-168 594.7 403 73.4
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.2e-167 593.6 423 71.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.1e-167 592.8 400 72.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.7e-167 592.4 419 69.9
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.6e-167 591.7 392 73.2
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 6.0e-167 591.3 422 70.1
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.0e-166 590.5 400 72.0
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.3e-166 590.1 407 73.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.8e-166 589.7 398 73.4
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.0e-166 589.0 433 69.5
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 4.3e-165 585.1 400 72.5
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 5.6e-165 584.7 433 70.4
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 7.4e-165 584.3 405 71.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.6e-164 583.2 403 71.5
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.6e-164 583.2 398 72.4
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 6.2e-164 581.3 398 71.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.4e-163 580.1 398 71.9
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.4e-163 579.3 398 71.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.1e-163 578.9 410 71.2
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 4.0e-163 578.6 413 69.7
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.0e-163 578.6 409 71.1
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 5.3e-163 578.2 410 71.0
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 6.9e-163 577.8 392 73.0
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 2.2e-161 572.8 475 63.2
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.2e-161 572.8 422 67.8
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 3.2e-160 568.9 400 70.0
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.2e-160 568.5 415 69.9
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 4.6e-159 565.1 404 69.8
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.9e-158 562.0 400 69.2
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 4.3e-157 558.5 415 67.2
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.8e-155 553.1 395 69.9
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.0e-154 549.7 384 73.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-153 547.4 401 67.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.9e-153 545.8 384 72.4
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 5.5e-152 541.6 382 72.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.7e-151 539.3 375 72.8
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 7.9e-151 537.7 387 66.9
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.4e-147 526.2 562 53.0
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 3.4e-146 522.3 413 62.0
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.0e-145 520.8 413 65.1
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 2.5e-144 516.2 390 67.2
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.6e-143 513.5 451 60.8
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.9e-143 511.1 392 67.3
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.0e-138 496.5 334 72.5
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.0e-137 494.2 421 60.3
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 7.2e-136 488.0 413 62.0
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-135 487.3 338 70.7
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.1e-133 480.7 344 67.4
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 5.7e-133 478.4 381 62.5
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 5.7e-133 478.4 386 61.4
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.3e-132 477.2 378 65.6
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-129 467.6 325 72.9
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.6e-127 459.1 342 67.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.8e-118 428.3 326 68.7
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 6.8e-118 428.3 334 63.5
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.1e-115 421.0 277 79.4
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 5.2e-110 402.1 369 54.5
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 8.9e-110 401.4 362 60.8
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 7.0e-107 391.7 293 69.3
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.3e-100 370.9 263 69.6
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 6.6e-97 358.6 317 58.7
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 1.3e-92 344.4 318 58.5
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.1e-91 341.3 406 47.3
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 8.1e-87 325.1 382 45.8
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 3.1e-86 323.2 228 70.2
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.3e-81 307.8 399 43.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 4.8e-63 246.1 170 65.9
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 8.1e-63 245.4 224 61.6
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.6e-58 231.1 274 47.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.5e-58 229.9 175 68.6
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.9e-51 207.6 328 36.6
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.6e-50 203.0 130 73.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 7.9e-50 202.2 151 67.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.0e-46 188.7 122 72.1
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-42 176.8 167 55.7
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.8e-38 164.5 140 62.9
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.0e-29 134.4 108 65.7
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.8e-25 121.3 85 65.9
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.9e-25 120.2 416 28.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.2e-23 114.4 95 64.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 5.9e-21 106.3 91 59.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 8.0e-18 95.9 72 66.7
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.2e-15 87.8 62 67.7
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.1e-14 84.0 68 57.4
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.2e-13 82.0 64 60.9
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.9e-11 74.7 49 65.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.2e-08 65.5 129 37.2
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 3.7e-07 60.5 40 65.0
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 4.8e-07 60.1 42 59.5
C03p89650 Brassica napus HOM05D005532 ORTHO05D102395 1.8e-06 58.2 45 71.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 5.3e-06 56.6 42 61.9


User provided reference genes

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