Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.6e-233 812.4 420 100.0
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.6e-233 812.4 420 100.0
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 8.2e-233 810.1 420 99.5
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 8.2e-233 810.1 420 99.5
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 8.2e-233 810.1 420 99.5
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.9e-226 788.9 420 96.9
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.5e-226 788.5 425 96.9
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 6.7e-219 763.8 422 94.1
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 6.7e-219 763.8 422 94.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 9.7e-218 760.0 422 93.6
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 9.7e-218 760.0 424 93.9
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 8.2e-217 756.9 420 94.0
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 3.4e-215 751.5 424 92.5
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 3.9e-211 738.0 421 92.6
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 3.7e-209 731.5 421 92.6
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 6.3e-209 730.7 420 91.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 2.7e-204 715.3 434 88.5
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 3.3e-202 708.4 422 88.6
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.2e-191 673.3 412 85.0
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.3e-190 669.8 428 82.2
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.8e-190 668.3 412 84.7
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 4.2e-189 664.8 429 83.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 7.2e-189 664.1 427 82.7
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.6e-188 661.8 427 82.9
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 3.7e-185 651.7 428 81.1
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.4e-184 649.0 412 82.3
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.2e-183 646.7 422 80.8
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.2e-183 646.7 408 83.3
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.6e-183 646.4 423 81.3
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 2.0e-183 646.0 428 81.5
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 3.5e-183 645.2 425 80.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.5e-183 644.8 412 82.0
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.0e-182 643.7 424 80.4
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.6e-180 636.3 423 80.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.5e-178 629.8 425 77.9
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 3.7e-177 625.2 409 80.0
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 5.4e-176 621.3 426 77.7
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.0e-175 619.4 428 78.3
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 6.6e-174 614.4 412 79.4
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.1e-173 613.6 453 74.6
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.9e-173 612.8 420 77.4
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.5e-173 612.5 416 77.6
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 5.6e-173 611.3 420 77.6
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 9.5e-173 610.5 428 76.4
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.2e-172 610.1 444 75.2
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.8e-172 609.0 424 78.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.7e-172 608.2 425 76.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 4.7e-172 608.2 421 76.5
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 4.7e-172 608.2 424 76.2
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.2e-172 607.8 424 78.5
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 6.2e-172 607.8 412 76.7
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 2.3e-171 605.9 424 77.6
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.1e-171 605.5 425 76.2
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 6.8e-171 604.4 425 76.2
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-170 603.6 426 75.6
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 2.0e-170 602.8 423 76.4
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 3.4e-170 602.1 425 76.5
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 3.4e-170 602.1 412 76.0
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.2e-169 599.4 426 75.4
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.9e-169 599.0 425 76.7
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 6.4e-169 597.8 422 75.4
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 2.4e-168 595.9 419 76.1
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 4.1e-168 595.1 426 75.1
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 5.4e-168 594.7 469 70.4
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.2e-167 593.6 418 76.6
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.2e-167 593.6 418 74.4
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.6e-167 593.2 430 75.3
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.6e-167 593.2 418 74.2
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 2.3e-166 589.3 436 74.1
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.3e-166 589.3 416 74.8
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 3.9e-166 588.6 424 74.1
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 6.6e-166 587.8 434 73.5
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 2.5e-165 585.9 425 73.6
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 3.3e-165 585.5 427 74.2
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 5.6e-165 584.7 424 74.1
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 9.5e-165 583.9 410 74.1
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 9.5e-165 583.9 424 74.1
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 9.5e-165 583.9 397 78.6
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.2e-164 583.6 426 75.4
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 2.8e-164 582.4 420 74.3
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.8e-164 582.4 410 76.3
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 3.6e-164 582.0 441 73.0
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.1e-163 580.5 424 73.1
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 3.1e-163 578.9 424 73.1
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 4.0e-163 578.6 420 75.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.0e-163 578.6 443 73.6
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 5.2e-163 578.2 419 74.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 3.4e-162 575.5 424 73.1
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 9.2e-160 567.4 418 74.4
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.1e-159 566.2 427 71.4
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.0e-158 562.4 373 79.6
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.5e-157 560.1 421 70.8
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.3e-157 558.9 460 67.2
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.6e-156 556.6 426 70.9
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 5.8e-154 548.1 457 66.7
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.3e-153 547.0 419 71.6
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.8e-153 545.4 410 71.2
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 1.6e-151 540.0 426 71.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 3.5e-151 538.9 427 67.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.5e-149 532.7 381 73.8
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.3e-149 532.3 506 60.5
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 4.7e-148 528.5 426 70.4
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.4e-147 526.9 425 70.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 6.9e-147 524.6 423 67.4
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.2e-143 513.8 511 60.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.5e-143 512.3 421 68.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.0e-143 511.5 411 69.8
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.1e-141 507.3 385 74.5
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.3e-140 503.8 483 63.1
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.2e-138 497.3 413 67.8
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.4e-138 495.7 369 74.0
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.9e-136 490.0 380 74.2
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.1e-133 480.7 429 62.5
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.3e-129 467.2 399 62.9
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 2.4e-128 463.0 427 60.9
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 4.8e-124 448.7 434 60.1
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.1e-123 447.6 441 56.2
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.5e-122 443.7 361 67.3
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 7.9e-119 431.4 315 73.7
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 3.0e-118 429.5 386 64.5
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.7e-117 424.5 411 59.1
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 4.8e-116 422.2 424 56.4
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 2.4e-115 419.9 342 67.0
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.6e-114 416.4 425 57.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 6.5e-113 411.8 423 59.6
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.5e-106 390.6 432 53.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.4e-99 367.5 368 57.9
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 5.2e-70 269.2 377 42.2
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 5.4e-67 259.2 212 67.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 4.3e-64 249.6 416 38.5
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 6.4e-36 156.0 201 50.7
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 4.4e-29 133.3 84 79.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 5.1e-17 93.2 55 81.8
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.9e-16 91.3 43 97.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.9e-16 91.3 43 97.7
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.8e-07 60.8 53 64.2


User provided reference genes

Program Settings