Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.2e-268 927.9 494 100.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 5.3e-223 777.7 500 85.2
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 5.3e-223 777.7 500 85.2
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 5.3e-223 777.7 500 85.2
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.8e-202 709.5 519 78.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 4.4e-201 704.9 503 79.3
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 4.1e-199 698.4 502 79.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 3.0e-194 682.2 525 75.6
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 5.2e-194 681.4 493 78.7
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 2.8e-184 649.0 496 75.0
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.8e-175 619.8 499 73.3
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.3e-168 597.0 496 68.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 5.8e-145 518.5 496 63.3
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 4.7e-131 472.2 379 74.4
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 4.5e-113 412.5 497 54.7
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.9e-111 407.1 497 53.5
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 2.8e-91 340.1 498 49.0
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 7.9e-86 322.0 296 67.6
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 5.7e-76 289.3 272 66.9
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.8e-74 284.3 184 87.0
BcaC08g42924 Brassica carinata HOM05D004411 ORTHO05D032367 4.0e-69 266.5 171 87.7
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 3.5e-65 253.4 300 49.3
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 5.9e-65 252.7 286 53.8
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.1e-63 248.4 249 56.6
BolC6t35294H Brassica oleracea HOM05D004411 ORTHO05D032367 1.9e-63 247.7 205 72.7
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 3.2e-63 246.9 249 56.2
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 5.5e-63 246.1 495 39.4
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 2.1e-62 244.2 249 59.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.7e-62 243.8 350 46.9
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.7e-62 243.0 254 55.5
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 6.1e-62 242.7 272 55.1
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 8.0e-62 242.3 250 56.4
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 8.0e-62 242.3 250 56.4
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 8.0e-62 242.3 250 56.4
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.4e-61 241.5 495 38.2
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 4.0e-61 240.0 271 53.5
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 8.8e-61 238.8 217 63.6
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.5e-60 238.0 269 54.3
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 2.6e-60 237.3 366 44.5
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.4e-60 236.9 252 55.2
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 5.7e-60 236.1 322 44.7
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.5e-60 235.7 252 57.5
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 9.8e-60 235.3 293 49.8
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.7e-59 234.6 271 52.4
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.2e-59 234.2 307 50.5
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.8e-59 233.8 351 47.3
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 3.7e-59 233.4 276 52.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 4.8e-59 233.0 344 45.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 6.3e-59 232.6 255 55.3
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 6.3e-59 232.6 304 50.0
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.8e-58 231.1 295 50.2
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 2.4e-58 230.7 259 52.1
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.1e-58 230.3 332 45.2
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-57 228.4 342 43.3
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.0e-57 227.6 261 53.6
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.7e-57 227.3 255 52.2
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 4.5e-57 226.5 245 54.7
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 4.5e-57 226.5 249 49.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 5.9e-57 226.1 284 46.1
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 5.9e-57 226.1 374 42.2
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 7.7e-57 225.7 342 45.0
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.0e-56 225.3 373 41.6
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.0e-56 225.3 245 52.7
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.3e-56 224.9 388 41.5
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 1.3e-56 224.9 370 42.4
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.3e-56 224.2 294 54.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 2.3e-56 224.2 353 43.6
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.0e-56 223.0 353 43.3
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 6.6e-56 222.6 245 53.5
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 1.1e-55 221.9 301 47.8
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.5e-55 221.5 253 49.8
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.9e-55 221.1 374 42.2
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.9e-55 221.1 246 50.8
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.9e-55 221.1 349 44.7
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 4.2e-55 219.9 291 48.5
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.2e-54 218.4 499 36.3
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.2e-54 218.4 252 51.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.8e-54 217.2 224 56.7
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.0e-53 215.3 352 41.5
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.4e-53 214.9 248 51.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 1.8e-53 214.5 249 51.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.3e-53 214.2 250 50.0
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.0e-53 213.8 326 46.3
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 5.2e-53 213.0 279 48.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 5.2e-53 213.0 276 47.5
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.2e-52 211.8 248 51.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.0e-52 211.1 332 44.9
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.3e-51 208.4 359 42.6
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.8e-51 207.2 308 47.4
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.7e-51 206.8 355 41.1
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 5.4e-50 203.0 397 38.0
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.6e-49 201.4 324 42.3
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 2.0e-49 201.1 268 45.5
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 4.5e-49 199.9 310 44.5
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.5e-47 194.1 174 70.1
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.5e-47 194.1 349 41.3
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-46 191.4 307 42.0
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 4.7e-46 189.9 248 50.0
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 6.1e-46 189.5 287 43.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 8.0e-46 189.1 254 44.5
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.0e-45 188.7 250 44.0
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.4e-45 188.3 186 59.1
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.1e-45 187.2 338 39.3
A09p64030 Brassica napus HOM05D004411 ORTHO05D032662 8.9e-45 185.7 118 86.4
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.4e-44 183.7 245 46.5
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 5.8e-44 183.0 339 39.5
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 7.5e-44 182.6 250 44.8
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 6.4e-43 179.5 111 89.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 7.0e-42 176.0 242 45.5
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.7e-41 174.1 295 42.7
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 3.5e-41 173.7 231 45.9
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.0e-41 172.9 272 46.7
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-40 172.2 125 78.4
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.0e-40 172.2 125 78.4
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 3.3e-39 167.2 181 55.2
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.6e-38 164.9 346 34.4
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 4.7e-38 163.3 241 42.7
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.2e-38 162.9 261 39.8
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.0e-38 162.5 268 42.2
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.3e-37 161.0 291 37.5
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 8.9e-37 159.1 234 45.3
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 7.5e-36 156.0 320 37.5
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 7.5e-36 156.0 210 45.2
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.4e-34 151.0 248 40.7
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-33 148.7 265 37.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.3e-27 128.6 86 81.4
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-27 127.9 274 35.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.9e-27 127.5 185 42.7
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.4e-26 125.2 208 39.9
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.4e-26 123.2 387 31.0
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 7.8e-25 119.4 254 37.0
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.9e-23 114.8 276 37.0
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.8e-22 110.9 200 36.0
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.6e-22 110.5 222 40.5
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-21 107.8 117 50.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 8.9e-21 105.9 181 38.1
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.0e-20 104.8 117 49.6
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 3.4e-20 104.0 165 40.6
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 4.2e-18 97.1 216 34.7
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 9.2e-18 95.9 117 47.0
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.1e-16 90.1 87 55.2
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 5.1e-16 90.1 172 38.4
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 8.7e-16 89.4 83 55.4
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.5e-15 88.6 79 58.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 2.5e-15 87.8 92 55.4
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 5.6e-15 86.7 117 47.0
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 9.0e-13 79.3 98 46.9
C06p01630 Brassica napus HOM05D004411 ORTHO05D032367 9.0e-13 79.3 50 84.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 2.6e-12 77.8 207 30.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 3.8e-11 73.9 270 27.8
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.4e-10 72.0 82 50.0
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.5e-07 62.0 116 35.3
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.3e-06 58.9 51 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.6e-06 58.5 130 33.1
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.6e-06 58.5 148 29.7
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.8e-06 57.8 112 36.6


User provided reference genes

Program Settings