Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.1e-148 530.0 283 100.0
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.2e-142 510.0 283 93.3
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 6.7e-138 494.2 283 94.0
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 6.7e-138 494.2 283 94.0
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 6.7e-138 494.2 283 94.0
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 7.2e-124 447.6 288 82.6
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 3.7e-112 408.7 299 77.6
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 2.6e-110 402.5 294 73.5
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 3.2e-100 369.0 297 73.4
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 1.6e-99 366.7 295 73.6
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 9.8e-97 357.5 294 73.5
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 8.3e-88 327.8 294 65.6
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.3e-84 315.8 284 65.5
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 1.1e-66 257.7 264 58.3
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 3.8e-56 222.6 284 49.6
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 6.4e-56 221.9 239 52.7
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 2.1e-54 216.9 234 52.1
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 2.1e-54 216.9 263 51.7
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 2.7e-54 216.5 277 46.2
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 2.7e-54 216.5 232 51.3
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 7.8e-54 214.9 270 47.8
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.0e-53 214.5 284 47.9
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 3.9e-53 212.6 254 49.2
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 1.1e-52 211.1 275 49.5
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 7.3e-52 208.4 243 47.7
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 9.6e-52 208.0 242 51.7
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.2e-51 207.6 287 47.7
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 8.1e-51 204.9 274 45.6
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.1e-50 204.5 226 53.5
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 3.1e-50 203.0 253 50.6
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 3.1e-50 203.0 287 47.0
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 5.2e-50 202.2 248 47.6
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 3.4e-49 199.5 211 56.4
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 5.8e-49 198.7 229 48.5
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 9.9e-49 198.0 222 51.4
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 4.9e-48 195.7 234 48.7
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.4e-47 194.1 230 47.8
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 3.2e-47 193.0 141 65.2
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 7.1e-47 191.8 282 42.6
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 9.3e-47 191.4 161 60.9
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 9.3e-47 191.4 277 42.2
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.5e-46 189.5 242 47.5
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 7.8e-46 188.3 265 43.8
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 1.3e-45 187.6 212 51.4
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 1.3e-45 187.6 232 47.4
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 3.0e-45 186.4 190 58.4
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 3.9e-45 186.0 177 54.8
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 3.9e-45 186.0 273 43.2
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 5.1e-45 185.7 167 59.9
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 2.5e-44 183.3 195 53.8
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.3e-44 183.0 124 71.0
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 7.3e-44 181.8 180 56.7
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 7.3e-44 181.8 224 49.6
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 1.6e-43 180.6 179 55.9
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 2.1e-43 180.3 124 68.5
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 4.8e-43 179.1 227 47.6
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 6.2e-43 178.7 272 43.0
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 8.1e-43 178.3 226 49.1
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 1.4e-42 177.6 265 43.8
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 6.9e-42 175.3 167 55.7
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 1.2e-41 174.5 132 62.1
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.2e-41 174.5 229 53.3
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 4.5e-41 172.6 222 51.8
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.6e-41 171.8 228 48.7
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.3e-40 171.0 227 44.5
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.2e-40 170.2 225 50.2
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 6.4e-40 168.7 254 42.5
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 8.4e-40 168.3 233 45.9
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 1.4e-39 167.5 258 46.1
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 2.1e-38 163.7 255 44.3
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 2.1e-38 163.7 302 40.4
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 3.5e-38 162.9 211 49.8
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 3.5e-38 162.9 123 63.4
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 6.0e-38 162.2 205 46.8
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 5.1e-37 159.1 212 46.7
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 5.1e-37 159.1 235 43.4
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 5.6e-36 155.6 120 61.7
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 2.1e-35 153.7 170 48.2
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.7e-35 152.9 146 56.8
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 3.1e-34 149.8 239 41.8
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 5.3e-34 149.1 129 55.0
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 1.5e-33 147.5 282 41.5
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 1.5e-33 147.5 201 45.3
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.1e-31 141.4 225 38.7
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 2.4e-31 140.2 165 48.5
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 2.1e-30 137.1 130 50.8
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 4.3e-28 129.4 221 38.5
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.6e-27 127.5 232 39.7
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 8.2e-27 125.2 124 48.4
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.4e-24 115.2 90 62.2
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 1.4e-23 114.4 133 45.1
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 2.5e-23 113.6 109 53.2
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 5.1e-21 105.9 122 50.0
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 4.8e-19 99.4 189 37.0
Aa31sc1417G10 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.8e-16 89.7 92 54.3
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 6.1e-14 82.4 59 69.5
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 5.7e-12 75.9 57 59.6
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 1.4e-10 71.2 151 36.4
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.5e-09 67.8 159 37.7
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 5.9e-09 65.9 147 42.9
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 8.5e-08 62.0 44 63.6
SMO353G0036 Selaginella moellendorffii HOM05D000001 ORTHO05D378284 7.9e-06 55.5 128 28.9


User provided reference genes

Program Settings