Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.0e-212 743.4 446 100.0
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 8.8e-185 650.6 447 85.2
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.1e-184 650.2 447 85.7
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.1e-184 650.2 448 85.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.2e-178 630.2 439 90.2
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.1e-166 590.5 454 78.6
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.3e-147 525.4 445 68.5
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 6.8e-145 518.1 429 68.8
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 3.4e-144 515.8 446 75.1
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.1e-142 510.8 471 66.5
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.8e-137 493.4 398 73.1
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 1.5e-136 490.3 467 68.3
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.7e-135 486.9 474 68.8
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 9.2e-134 481.1 263 85.2
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.9e-127 459.5 260 80.4
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.9e-127 459.5 260 80.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 4.9e-127 458.8 262 81.3
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 1.1e-126 457.6 258 81.8
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.1e-126 457.6 262 80.9
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.4e-126 456.4 262 80.5
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.4e-126 456.4 262 80.5
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 4.2e-126 455.7 260 80.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 4.2e-126 455.7 262 80.9
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.7e-125 453.0 260 79.6
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.7e-125 453.0 260 80.8
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.6e-125 452.2 256 80.1
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.6e-125 452.2 256 79.3
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 4.6e-125 452.2 262 78.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 6.0e-125 451.8 262 79.8
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 7.8e-125 451.4 253 80.6
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.3e-124 449.9 262 80.2
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.9e-124 449.1 256 79.7
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 8.7e-124 448.0 256 79.3
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.5e-123 446.4 255 79.2
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.3e-123 446.0 260 78.8
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 3.3e-123 446.0 256 78.9
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 5.6e-123 445.3 260 77.7
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 5.6e-123 445.3 262 79.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.3e-122 444.1 260 80.4
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.6e-122 443.7 262 77.1
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.6e-122 443.7 258 79.5
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.6e-122 443.7 260 79.2
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 2.1e-122 443.4 258 79.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.8e-122 443.0 260 78.1
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 3.6e-122 442.6 262 77.9
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 6.2e-122 441.8 261 78.9
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.1e-121 441.0 258 78.7
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.0e-121 439.1 253 80.2
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.0e-121 439.1 260 78.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 6.9e-121 438.3 253 79.4
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 6.9e-121 438.3 253 79.1
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 9.0e-121 438.0 260 78.1
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.5e-120 437.2 260 76.5
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.0e-120 436.8 262 75.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.0e-120 436.8 262 75.6
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 2.0e-120 436.8 262 77.5
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.6e-120 436.4 253 77.5
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 4.4e-120 435.6 262 77.9
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 9.9e-120 434.5 261 77.0
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 9.9e-120 434.5 261 77.4
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 9.9e-120 434.5 247 80.6
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-119 433.7 253 78.7
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.7e-119 433.7 261 76.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.7e-119 433.7 260 77.3
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.7e-119 433.7 260 77.7
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.9e-119 433.0 262 76.7
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.9e-119 433.0 262 77.1
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 6.4e-119 431.8 262 76.7
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 8.4e-119 431.4 262 76.3
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.1e-118 431.0 260 75.8
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.1e-118 431.0 258 77.5
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.9e-118 430.3 260 77.3
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 4.2e-118 429.1 282 70.9
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.6e-117 427.2 261 75.9
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.7e-117 426.4 253 79.4
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.5e-117 426.0 252 76.2
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.6e-117 425.6 254 77.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 4.6e-117 425.6 261 75.9
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.3e-116 424.1 261 76.2
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.9e-116 422.5 258 77.5
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.5e-115 420.6 256 75.4
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.5e-115 419.9 252 77.0
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.3e-115 419.5 249 75.5
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.3e-115 419.5 260 74.6
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.3e-115 419.1 262 75.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 5.6e-115 418.7 253 75.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 5.6e-115 418.7 262 72.9
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 9.6e-115 417.9 255 76.1
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.6e-114 417.2 253 75.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 4.8e-114 415.6 260 74.6
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 6.2e-114 415.2 262 74.0
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.2e-114 415.2 261 73.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 8.1e-114 414.8 262 74.0
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 9.0e-113 411.4 252 73.0
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.8e-112 408.7 252 73.0
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 8.4e-111 404.8 253 75.1
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.1e-110 404.4 237 78.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.2e-110 402.9 257 73.2
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 4.2e-110 402.5 248 74.6
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 7.1e-110 401.7 259 73.4
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.2e-109 401.0 314 63.4
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 2.3e-108 396.7 259 72.6
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 1.5e-107 394.0 237 75.9
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 2.4e-105 386.7 301 61.1
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 5.8e-104 382.1 262 71.0
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.5e-102 376.7 258 70.9
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.8e-100 370.5 229 75.1
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.1e-100 369.0 258 69.8
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.5e-99 366.7 257 68.1
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 2.5e-99 366.7 260 67.7
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 3.3e-99 366.3 250 68.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 9.6e-99 364.8 259 67.2
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.8e-97 360.5 202 78.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 9.0e-97 358.2 213 77.0
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.9e-94 350.5 207 74.4
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.0e-92 343.2 257 65.4
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 7.4e-91 338.6 262 61.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.4e-89 334.3 262 61.5
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 4.6e-85 319.3 254 58.3
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 6.7e-84 315.5 184 78.3
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.7e-79 300.8 173 81.5
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.7e-79 300.8 173 81.5
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 8.5e-79 298.5 250 60.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.1e-78 298.1 246 59.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.5e-78 297.0 171 79.5
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.2e-77 294.7 191 72.8
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.0e-76 291.6 173 77.5
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.4e-76 291.2 173 78.0
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.3e-75 286.6 173 76.9
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-74 284.6 170 77.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.4e-73 280.4 222 63.1
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.1e-73 278.5 252 54.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.0e-68 265.0 243 58.4
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 8.2e-66 255.4 259 51.4
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 7.0e-65 252.3 169 68.6
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 8.5e-63 245.4 243 50.6
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.6e-61 240.0 194 59.8
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.3e-58 231.5 192 57.3
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.4e-52 211.5 252 46.0
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.0e-51 207.6 177 54.8
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.9e-46 191.0 231 46.3
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.5e-46 189.5 181 55.2
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 7.2e-46 189.1 128 71.9
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.1e-45 187.6 111 78.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.8e-45 187.2 174 52.9
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.7e-45 186.4 111 77.5
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.4e-44 184.9 229 45.4
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 3.2e-41 173.7 266 41.0
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.6e-38 162.9 129 59.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 7.3e-38 162.5 124 59.7
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.0e-31 140.6 79 74.7
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.8e-28 131.3 77 74.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 8.1e-13 79.3 53 62.3
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 9.9e-11 72.4 49 61.2
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 9.9e-11 72.4 49 61.2
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.1e-07 60.1 159 27.0
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.1e-07 60.1 159 27.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.1e-07 60.1 166 28.3
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.5e-06 58.5 83 34.9
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 4.3e-06 57.0 143 27.3
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 9.6e-06 55.8 212 24.5


User provided reference genes

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