Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p01790 Brassica napus HOM05D003212 ORTHO05D003959 5.1e-41 170.6 85 100.0
A07p17330 Brassica napus HOM05D003212 ORTHO05D003959 1.5e-40 169.1 85 98.8
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.2e-13 79.7 49 71.4
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 1.5e-13 79.3 48 77.1
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 1.5e-13 79.3 48 77.1
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 1.5e-13 79.3 48 77.1
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 1.5e-13 79.3 48 77.1
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 2.0e-13 79.0 48 75.0
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 2.0e-13 79.0 49 71.4
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 2.0e-13 79.0 49 71.4
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 2.6e-13 78.6 48 72.9
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 2.6e-13 78.6 48 72.9
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 2.6e-13 78.6 48 72.9
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 3.4e-13 78.2 48 70.8
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 3.4e-13 78.2 63 61.9
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 75.0
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 75.0
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 75.0
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 4.5e-13 77.8 49 71.4
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 70.8
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 70.8
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 72.9
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 72.9
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 4.5e-13 77.8 48 72.9
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 72.9
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 72.9
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 72.9
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 72.9
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 72.9
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 5.9e-13 77.4 63 60.3
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 5.9e-13 77.4 48 70.8
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 68.8
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 75.0
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 75.0
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 75.0
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 75.0
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 70.8
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 70.8
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 70.8
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 70.8
HPP92_003227 Vanilla planifolia HOM05D003212 ORTHO05D003959 7.7e-13 77.0 48 70.8
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 1.0e-12 76.6 49 69.4
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 72.9
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 72.9
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 68.8
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 68.8
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 70.8
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 70.8
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 1.0e-12 76.6 48 72.9
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.3e-12 76.3 49 69.4
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 1.3e-12 76.3 63 58.7
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 1.3e-12 76.3 63 58.7
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 68.8
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
GSVIVG01000654001 Vitis vinifera HOM05D003212 ORTHO05D003959 1.3e-12 76.3 48 70.8
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 49 69.4
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 70.8
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 70.8
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 68.8
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 70.8
Lalb_Chr04g0264051 Lupinus albus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 51 66.7
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 1.7e-12 75.9 51 66.7
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 70.8
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 1.7e-12 75.9 48 70.8
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
Glyma.17G012702 Glycine max HOM05D003212 ORTHO05D003959 2.2e-12 75.5 52 65.4
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 2.2e-12 75.5 50 66.0
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 2.2e-12 75.5 48 68.8
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 2.9e-12 75.1 49 67.3
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Cpa.g.sc223.10 Carica papaya HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 70.8
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 66.7
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 2.9e-12 75.1 62 51.6
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 68.8
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 2.9e-12 75.1 48 66.7
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 70.8
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 70.8
Migut.O00503 Erythranthe guttata HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 70.8
Glyma.20G015500 Glycine max HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 66.7
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 3.8e-12 74.7 48 68.8
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 3.8e-12 74.7 49 69.4
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 68.8
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 70.8
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 68.8
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 70.8
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 70.8
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 70.8
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 5.0e-12 74.3 48 68.8
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 68.8
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 68.8
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 68.8
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 68.8
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 68.8
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 6.5e-12 73.9 48 66.7
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
SEGI_29745 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 8.5e-12 73.6 48 66.7
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.1e-11 73.2 49 63.3
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 1.1e-11 73.2 48 68.8
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 66.7
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 1.4e-11 72.8 48 64.6
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 1.9e-11 72.4 48 66.7
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 9.4e-11 70.1 56 60.7
AUR62003806 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.2e-10 69.7 48 62.5
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 1.6e-10 69.3 48 64.6
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 7.9e-10 67.0 48 58.3
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 1.8e-09 65.9 48 58.3
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 3.0e-09 65.1 48 66.7
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 6.7e-09 63.9 63 44.4
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 8.8e-09 63.5 47 55.3
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 1.9e-08 62.4 48 52.1
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 3.3e-08 61.6 63 42.9


User provided reference genes

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