Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p00940 Brassica napus HOM05D001692 ORTHO05D005276 7.6e-175 617.1 316 100.0
BcaC08g43540 Brassica carinata HOM05D001692 ORTHO05D005276 1.6e-143 513.1 294 89.1
C06p09290 Brassica napus HOM05D001692 ORTHO05D005276 6.1e-140 501.1 305 86.9
BcaB07g33320 Brassica carinata HOM05D001692 ORTHO05D005276 8.8e-139 497.3 299 86.6
Sp1g40080 Schrenkiella parvula HOM05D001692 ORTHO05D005276 2.7e-135 485.7 295 84.1
BolC6t36007H Brassica oleracea HOM05D001692 ORTHO05D005276 1.7e-134 483.0 291 89.0
AT1G53580 Arabidopsis thaliana HOM05D001692 ORTHO05D005276 8.0e-132 474.2 293 82.9
AL1G62170 Arabidopsis lyrata HOM05D001692 ORTHO05D005276 3.4e-130 468.8 299 82.6
Thhalv10011701m.g Eutrema salsugineum HOM05D001692 ORTHO05D005276 7.5e-130 467.6 289 83.7
BcaB04g17072 Brassica carinata HOM05D001692 ORTHO05D005276 4.8e-129 464.9 294 82.0
Carub.0001s4279 Capsella rubella HOM05D001692 ORTHO05D005276 2.4e-128 462.6 294 82.7
A08p01500 Brassica napus HOM05D001692 ORTHO05D005276 1.6e-127 459.9 302 79.5
BraA08t32202Z Brassica rapa HOM05D001692 ORTHO05D005276 2.3e-126 456.1 302 78.8
BolC3t21480H Brassica oleracea HOM05D001692 ORTHO05D005276 6.6e-126 454.5 300 79.3
BcaC01g01401 Brassica carinata HOM05D001692 ORTHO05D005276 1.1e-125 453.8 295 80.3
C03p91630 Brassica napus HOM05D001692 ORTHO05D005276 2.5e-125 452.6 300 78.7
CARHR043840 Cardamine hirsuta HOM05D001692 ORTHO05D005276 2.0e-122 443.0 240 90.0
THA.LOC104822594 Tarenaya hassleriana HOM05D001692 ORTHO05D005276 4.3e-117 425.2 247 83.8
Gohir.D01G034901 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.6e-116 422.2 244 82.8
Gohir.A01G044100 Gossypium hirsutum HOM05D001692 ORTHO05D005276 8.0e-116 421.0 244 82.8
Gorai.002G043100 Gossypium raimondii HOM05D001692 ORTHO05D005276 8.0e-116 421.0 245 82.9
Cpa.g.sc77.83 Carica papaya HOM05D001692 ORTHO05D005276 1.8e-115 419.9 260 79.6
Ciclev10021343m.g Citrus clementina HOM05D001692 ORTHO05D005276 5.2e-115 418.3 243 82.7
Lsat_1_v5_gn_5_126060 Lactuca sativa HOM05D001692 ORTHO05D005276 6.8e-115 417.9 264 76.5
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea HOM05D001692 ORTHO05D005276 2.0e-114 416.4 236 83.5
SalBow1G5551 Salvia bowleyana HOM05D001692 ORTHO05D005276 4.4e-114 415.2 239 80.8
CsaV3_4G032640 Cucumis sativus L. HOM05D001692 ORTHO05D005276 1.7e-113 413.3 258 78.3
CSS0017658 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 2.2e-113 412.9 244 79.5
CSS0030572 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 2.9e-113 412.5 244 79.5
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 2.9e-113 412.5 244 81.1
HanXRQChr10g0305671 Helianthus annuus HOM05D001692 ORTHO05D005276 2.9e-113 412.5 243 81.1
Aa31LG10G1670 Aethionema arabicum HOM05D001692 ORTHO05D005276 3.7e-113 412.1 277 75.5
Duzib187G0194 Durio zibethinus HOM05D001692 ORTHO05D005276 6.4e-113 411.4 244 81.1
Glyma.13G261400 Glycine max HOM05D001692 ORTHO05D005276 6.4e-113 411.4 295 69.8
MSTRG.6728 Avicennia marina HOM05D001692 ORTHO05D005276 1.1e-112 410.6 246 79.3
Sed0008182 Sechium edule HOM05D001692 ORTHO05D005276 1.4e-112 410.2 238 82.4
MD17G1135300 Malus domestica HOM05D001692 ORTHO05D005276 1.9e-112 409.8 239 82.4
PGSC0003DMG400008562 Solanum tuberosum HOM05D001692 ORTHO05D005276 2.4e-112 409.5 238 80.7
SalBow8G1908 Salvia bowleyana HOM05D001692 ORTHO05D005276 3.2e-112 409.1 239 80.8
ClCG11G017000 Citrullus lanatus HOM05D001692 ORTHO05D005276 4.1e-112 408.7 238 81.5
Oeu001313.1 Olea europaea HOM05D001692 ORTHO05D005276 4.1e-112 408.7 244 78.3
Phvul.005G062700 Phaseolus vulgaris HOM05D001692 ORTHO05D005276 4.1e-112 408.7 243 79.8
TWI59G0785 Tripterygium wilfordii HOM05D001692 ORTHO05D005276 4.1e-112 408.7 239 82.8
MD09G1149000 Malus domestica HOM05D001692 ORTHO05D005276 5.4e-112 408.3 239 82.0
QL08p044937 Quercus lobata HOM05D001692 ORTHO05D005276 5.4e-112 408.3 239 82.4
Solyc12g011430.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 5.4e-112 408.3 238 80.3
Manes.02G089400 Manihot esculenta HOM05D001692 ORTHO05D005276 7.0e-112 407.9 275 73.5
Potri.001G380100 Populus trichocarpa HOM05D001692 ORTHO05D005276 7.0e-112 407.9 238 81.9
GSVIVG01020841001 Vitis vinifera HOM05D001692 ORTHO05D005276 7.0e-112 407.9 239 82.4
FvH4_6g38610 Fragaria vesca HOM05D001692 ORTHO05D005276 9.2e-112 407.5 239 83.3
CANSAT56G0439 Cannabis sativa HOM05D001692 ORTHO05D005276 2.0e-111 406.4 252 78.2
Cc05_g10460 Coffea canephora HOM05D001692 ORTHO05D005276 2.0e-111 406.4 240 78.3
Migut.M00626 Erythranthe guttata HOM05D001692 ORTHO05D005276 2.0e-111 406.4 251 76.1
LjContig00272g0024686 Lotus japonicus HOM05D001692 ORTHO05D005276 2.7e-111 406.0 237 81.0
CSS0026037 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.5e-111 405.6 239 80.3
Sed0012666 Sechium edule HOM05D001692 ORTHO05D005276 4.6e-111 405.2 238 81.5
Sopen12g006780 Solanum pennellii HOM05D001692 ORTHO05D005276 4.6e-111 405.2 238 79.8
RcHm_v2.0_Chr2g0152061 Rosa chinensis HOM05D001692 ORTHO05D005276 6.0e-111 404.8 239 82.4
CSS0018182 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 7.8e-111 404.4 239 80.3
Lj3g0022741 Lotus japonicus HOM05D001692 ORTHO05D005276 7.8e-111 404.4 249 78.3
Potri.005G204800 Populus trichocarpa HOM05D001692 ORTHO05D005276 1.0e-110 404.1 277 70.4
EL10Ac4g08464 Beta vulgaris HOM05D001692 ORTHO05D005276 1.3e-110 403.7 241 80.1
GSVIVG01000481001 Vitis vinifera HOM05D001692 ORTHO05D005276 1.3e-110 403.7 241 79.3
Solyc07g061960.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 2.3e-110 402.9 243 77.8
Sopen07g030230 Solanum pennellii HOM05D001692 ORTHO05D005276 3.0e-110 402.5 243 78.2
MSTRG.15020 Avicennia marina HOM05D001692 ORTHO05D005276 5.0e-110 401.7 283 70.0
VMungo1080G0123 Vigna mungo HOM05D001692 ORTHO05D005276 5.0e-110 401.7 240 79.6
CANSAT64G1255 Cannabis sativa HOM05D001692 ORTHO05D005276 6.6e-110 401.4 239 80.8
Prupe.3G177200 Prunus persica HOM05D001692 ORTHO05D005276 6.6e-110 401.4 239 79.5
Eucgr.L01848 Eucalyptus grandis HOM05D001692 ORTHO05D005276 8.6e-110 401.0 256 75.4
TAR627G0628 Trochodendron aralioides HOM05D001692 ORTHO05D005276 8.6e-110 401.0 277 71.1
Ca_03405_v3 Cicer arietinum L. HOM05D001692 ORTHO05D005276 1.9e-109 399.8 237 80.2
Dinv13329 Davidia involucrata HOM05D001692 ORTHO05D005276 1.9e-109 399.8 284 71.1
Dinv26682 Davidia involucrata HOM05D001692 ORTHO05D005276 1.9e-109 399.8 239 78.7
CAN.G375.74 Capsicum annuum HOM05D001692 ORTHO05D005276 2.5e-109 399.4 235 79.6
Medtr2g072190 Medicago truncatula HOM05D001692 ORTHO05D005276 3.3e-109 399.1 237 79.3
Peaxi162Scf00000g05119 Petunia axillaris HOM05D001692 ORTHO05D005276 3.3e-109 399.1 238 80.3
Os01g0667200 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D005276 5.6e-109 398.3 260 74.6
Lalb_Chr01g0016151 Lupinus albus HOM05D001692 ORTHO05D005276 7.3e-109 397.9 237 79.7
PGR042G3356 Punica granatum HOM05D001692 ORTHO05D005276 9.5e-109 397.5 243 78.6
Eucgr.A02020 Eucalyptus grandis HOM05D001692 ORTHO05D005276 1.2e-108 397.1 252 75.4
Eucgr.F01401 Eucalyptus grandis HOM05D001692 ORTHO05D005276 1.2e-108 397.1 255 74.5
Aqoxy1G01726 Aquilegia oxysepala HOM05D001692 ORTHO05D005276 1.6e-108 396.7 244 77.5
ECA234G1166 Erigeron canadensis HOM05D001692 ORTHO05D005276 2.1e-108 396.4 233 81.5
PSO675G6085 Papaver somniferum HOM05D001692 ORTHO05D005276 2.8e-108 396.0 239 77.8
CiPaw.03G191700 Carya illinoinensis HOM05D001692 ORTHO05D005276 8.0e-108 394.4 239 78.2
PSO541G6360 Papaver somniferum HOM05D001692 ORTHO05D005276 2.3e-107 392.9 238 78.2
Sc03g0010860 Simmondsia chinensis HOM05D001692 ORTHO05D005276 4.0e-107 392.1 244 77.9
Nn3g20715 Nelumbo nucifera HOM05D001692 ORTHO05D005276 5.2e-107 391.7 238 77.3
FAN05G1140 Fragaria x ananassa HOM05D001692 ORTHO05D005276 6.8e-107 391.3 243 78.6
unitig_899.g15303 Utricularia gibba HOM05D001692 ORTHO05D005276 6.8e-107 391.3 242 77.3
AUR62037988 Chenopodium quinoa HOM05D001692 ORTHO05D005276 1.5e-106 390.2 241 78.4
BraA06t23321Z Brassica rapa HOM05D001692 ORTHO05D005276 4.4e-106 388.7 222 91.9
Peaxi162Scf00111g00115 Petunia axillaris HOM05D001692 ORTHO05D005276 4.4e-106 388.7 234 78.6
Sabra16G0250400 Salix brachista HOM05D001692 ORTHO05D005276 1.3e-105 387.1 298 66.8
AUR62019708 Chenopodium quinoa HOM05D001692 ORTHO05D005276 3.7e-105 385.6 241 77.2
SGA_v2.0_scaffold70G23592 Striga asiatica HOM05D001692 ORTHO05D005276 1.4e-104 383.6 287 65.5
Nitab4.5_0009792g0010 Nicotiana tabacum HOM05D001692 ORTHO05D005276 2.4e-104 382.9 234 77.8
COL.COLO4_08889 Corchorus olitorius HOM05D001692 ORTHO05D005276 4.1e-104 382.1 234 79.1
Haze_13535 Corylus avellana HOM05D001692 ORTHO05D005276 4.1e-104 382.1 279 68.1
ATR0585G035 Amborella trichopoda HOM05D001692 ORTHO05D005276 7.1e-104 381.3 238 76.1
Nitab4.5_0006409g0020 Nicotiana tabacum HOM05D001692 ORTHO05D005276 9.2e-104 380.9 261 69.7
DCAR_019628 Daucus carota HOM05D001692 ORTHO05D005276 1.2e-103 380.6 277 69.0
Nn4g26535 Nelumbo nucifera HOM05D001692 ORTHO05D005276 1.2e-103 380.6 238 75.2
CARHR043830 Cardamine hirsuta HOM05D001692 ORTHO05D005276 2.1e-103 379.8 240 76.7
SEGI_02719 Sequoiadendron giganteum HOM05D001692 ORTHO05D005276 2.1e-103 379.8 237 75.1
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea HOM05D001692 ORTHO05D005276 3.5e-103 379.0 292 65.8
Lj8A144G64 Lonicera japonica HOM05D001692 ORTHO05D005276 2.3e-102 376.3 253 70.4
FAN02G2152 Fragaria x ananassa HOM05D001692 ORTHO05D005276 3.0e-102 375.9 255 73.7
Mapoly0002s0284 Marchantia polymorpha HOM05D001692 ORTHO05D005276 3.0e-102 375.9 237 75.9
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 4.3e-101 372.1 238 74.4
HPP92_009985 Vanilla planifolia HOM05D001692 ORTHO05D005276 4.3e-101 372.1 243 72.4
Zm00001eb157380 Zea mays HOM05D001692 ORTHO05D005276 7.3e-101 371.3 310 61.3
MELO3C025595.2 Cucumis melo HOM05D001692 ORTHO05D005276 1.6e-100 370.2 234 76.1
FAN14G4917 Fragaria x ananassa HOM05D001692 ORTHO05D005276 1.6e-100 370.2 272 69.9
MBI07_g26365_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 1.6e-100 370.2 235 74.0
Pp3c15_10210 Physcomitrium patens HOM05D001692 ORTHO05D005276 6.2e-100 368.2 237 73.0
FAN09G0561 Fragaria x ananassa HOM05D001692 ORTHO05D005276 1.4e-99 367.1 255 72.5
SMO364G0689 Selaginella moellendorffii HOM05D001692 ORTHO05D005276 1.8e-99 366.7 237 73.0
CAN.G1320.2 Capsicum annuum HOM05D001692 ORTHO05D005276 5.2e-99 365.2 238 73.5
PGSC0003DMG400007053 Solanum tuberosum HOM05D001692 ORTHO05D005276 7.6e-98 361.3 215 79.1
MBI10_g02223_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 9.9e-98 360.9 236 73.7
Psat1g009000 Pisum sativum HOM05D001692 ORTHO05D005276 6.4e-97 358.2 250 70.8
Pp3c9_13000 Physcomitrium patens HOM05D001692 ORTHO05D005276 3.2e-96 355.9 233 71.7
CARHR042800 Cardamine hirsuta HOM05D001692 ORTHO05D005276 1.3e-94 350.5 242 71.5
Duzib213G0109 Durio zibethinus HOM05D001692 ORTHO05D005276 4.3e-93 345.5 206 80.1
Thecc.01G169600 Theobroma cacao HOM05D001692 ORTHO05D005276 1.2e-92 344.0 215 78.6
Nitab4.5_0005492g0050 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.0e-86 324.3 230 68.3
Thecc.07G141800 Theobroma cacao HOM05D001692 ORTHO05D005276 1.6e-84 317.0 256 64.5
TPR.G29676 Trifolium pratense HOM05D001692 ORTHO05D005276 2.4e-83 313.2 211 71.6
CBR_g52354 Chara braunii HOM05D001692 ORTHO05D005276 2.6e-82 309.7 289 57.1
PGR083G0106 Punica granatum HOM05D001692 ORTHO05D005276 2.4e-80 303.1 204 73.0
Nitab4.5_0000639g0070 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.1e-75 287.7 319 52.0
RhsimUnG0205800 Rhododendron simsii HOM05D001692 ORTHO05D005276 1.3e-73 280.8 165 78.8
Actinidia03648 Actinidia chinensis HOM05D001692 ORTHO05D005276 2.2e-73 280.0 223 64.1
MCO11G587 Micromonas commoda HOM05D001692 ORTHO05D005276 1.4e-72 277.3 243 59.7
Sabra05G0155600 Salix brachista HOM05D001692 ORTHO05D005276 4.2e-72 275.8 168 78.6
PRCOL_00005441 Prasinoderma coloniale HOM05D001692 ORTHO05D005276 1.3e-70 270.8 272 53.3
vmacro09424 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 3.4e-66 256.1 276 51.4
Haze_27488 Corylus avellana HOM05D001692 ORTHO05D005276 1.9e-64 250.4 244 56.1
MBI10_g05866_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 4.2e-64 249.2 191 64.9
Hund10367 Selenicereus undatus HOM05D001692 ORTHO05D005276 3.0e-62 243.0 223 56.5
TPR.G19262 Trifolium pratense HOM05D001692 ORTHO05D005276 5.0e-57 225.7 130 80.0
Gorai.006G053200 Gossypium raimondii HOM05D001692 ORTHO05D005276 1.9e-56 223.8 135 77.8
Lalb_Chr25g0285521 Lupinus albus HOM05D001692 ORTHO05D005276 2.7e-55 219.9 142 73.2
Gorai.005G073200 Gossypium raimondii HOM05D001692 ORTHO05D005276 2.5e-53 213.4 126 79.4
CBR_g8131 Chara braunii HOM05D001692 ORTHO05D005276 1.3e-52 211.1 196 55.1
Gohir.D04G055900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.1e-51 206.5 126 77.8
Gohir.D03G015800 Gossypium hirsutum HOM05D001692 ORTHO05D005276 5.9e-50 202.2 122 78.7
Gohir.D06G025300 Gossypium hirsutum HOM05D001692 ORTHO05D005276 5.9e-50 202.2 122 78.7
Gohir.D11G187900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 5.9e-50 202.2 122 78.7
CDE02G1772 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 3.4e-42 176.4 114 71.9
Lsat_1_v5_gn_0_2340 Lactuca sativa HOM05D001692 ORTHO05D005276 4.2e-40 169.5 144 59.0
SHI03278 Sapria himalayana HOM05D001692 ORTHO05D005276 1.5e-37 161.0 111 65.8
CDE02G3376 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 1.7e-36 157.5 103 73.8
Gorai.013G082600 Gossypium raimondii HOM05D001692 ORTHO05D005276 9.1e-35 151.8 97 74.2
vmacro09423 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 4.4e-29 132.9 76 80.3
Sabra05G0155400 Salix brachista HOM05D001692 ORTHO05D005276 1.4e-27 127.9 75 76.0
RhsimUnG0205900 Rhododendron simsii HOM05D001692 ORTHO05D005276 7.0e-27 125.6 75 77.3
AagrBONN_evm.TU.Sc2ySwM_117.1112 Anthoceros agrestis HOM05D001692 ORTHO05D005276 8.0e-23 112.1 63 82.5
SHI03282 Sapria himalayana HOM05D001692 ORTHO05D005276 9.4e-16 88.6 57 71.9
Haze_27434 Corylus avellana HOM05D002042 ORTHO05D008431 2.7e-15 87.0 171 35.7
AagrBONN_evm.TU.Sc2ySwM_344.1580 Anthoceros agrestis HOM05D002042 ORTHO05D008431 8.8e-14 82.0 174 32.8
Medtr7g118110 Medicago truncatula HOM05D000168 ORTHO05D048861 1.5e-13 81.3 51 74.5
Mapoly0204s0005 Marchantia polymorpha HOM05D002042 ORTHO05D003928 2.0e-13 80.9 172 34.3
Medtr5g021570 Medicago truncatula HOM05D001692 ORTHO05D048896 7.5e-13 79.0 46 78.3
Medtr5g097770 Medicago truncatula HOM05D001692 ORTHO05D048896 7.5e-13 79.0 46 78.3
Haze_26804 Corylus avellana HOM05D002042 ORTHO05D003928 2.2e-12 77.4 197 28.9
AagrBONN_evm.TU.Sc2ySwM_117.1559 Anthoceros agrestis HOM05D002042 ORTHO05D019658 2.8e-12 77.0 222 29.3
Cre12.g557700 Chlamydomonas reinhardtii HOM05D002042 ORTHO05D003928 3.7e-12 76.6 156 33.3
SHI03281 Sapria himalayana HOM05D001692 ORTHO05D000001 4.9e-12 76.3 102 45.1
Lj3g0017638 Lotus japonicus HOM05D002042 ORTHO05D003928 2.4e-11 73.9 184 31.0
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 4.1e-11 73.2 141 36.2
Phvul.011G053100 Phaseolus vulgaris HOM05D002042 ORTHO05D003928 1.2e-10 71.6 179 31.3
VMungo1127G1149 Vigna mungo HOM05D002042 ORTHO05D003928 7.7e-10 68.9 178 30.3
Cfa025793 Carpinus fangiana HOM05D002042 ORTHO05D008431 2.5e-08 63.9 179 31.8


User provided reference genes

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