Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 6.2e-71 270.8 146 100.0
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 6.2e-71 270.8 146 100.0
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 1.5e-40 169.9 130 76.2
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.7e-36 156.4 89 93.3
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.4e-35 153.3 90 88.9
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 3.6e-34 148.7 111 81.1
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 7.9e-34 147.5 102 85.3
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 7.9e-34 147.5 102 85.3
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 1.4e-33 146.7 111 80.2
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.4e-33 146.7 107 81.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.9e-33 145.2 93 83.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 5.1e-33 144.8 92 81.5
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 2.5e-32 142.5 92 81.5
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 9.7e-32 140.6 94 86.2
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.4e-30 136.7 92 77.2
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.1e-30 135.6 93 78.5
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 2.2e-20 102.8 95 69.5
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 3.8e-20 102.1 96 64.6
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.5e-20 101.3 94 67.0
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 5.5e-19 98.2 94 66.0
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.6e-18 95.5 95 66.3
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.2e-13 80.5 95 60.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 2.0e-13 79.7 94 56.4
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 2.0e-13 79.7 92 53.3
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 2.6e-13 79.3 95 53.7
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.5e-13 79.0 94 54.3
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 5.9e-13 78.2 93 54.8
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.0e-12 77.4 88 55.7
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.7e-12 76.6 92 55.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.2e-12 76.3 95 56.8
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.9e-12 75.9 97 55.7
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 6.5e-12 74.7 95 56.8
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 6.5e-12 74.7 99 53.5
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 6.5e-12 74.7 95 51.6
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 1.5e-11 73.6 92 47.8
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 2.5e-11 72.8 93 51.6
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 3.2e-11 72.4 96 47.9
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 4.2e-11 72.0 101 47.5
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 5.5e-11 71.6 96 49.0
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 5.5e-11 71.6 95 50.5
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 7.2e-11 71.2 95 52.6
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 7.2e-11 71.2 91 56.0
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 9.4e-11 70.9 87 52.9
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.2e-10 70.5 95 50.5
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.6e-10 70.1 123 46.3
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 1.6e-10 70.1 92 52.2
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 1.6e-10 70.1 95 55.8
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 1.6e-10 70.1 100 53.0
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 2.1e-10 69.7 106 49.1
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 2.7e-10 69.3 87 51.7
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.7e-10 69.3 96 51.0
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.7e-10 69.3 93 49.5
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 4.7e-10 68.6 142 42.3
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 4.7e-10 68.6 93 48.4
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 8.0e-10 67.8 95 46.3
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 8.0e-10 67.8 97 52.6
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 1.0e-09 67.4 94 48.9
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.0e-09 67.4 99 53.5
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 1.4e-09 67.0 97 48.5
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 1.4e-09 67.0 95 52.6
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 1.8e-09 66.6 90 48.9
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 2.3e-09 66.2 78 48.7
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.3e-09 66.2 87 44.8
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 3.0e-09 65.9 55 63.6
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 3.0e-09 65.9 97 52.6
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.0e-09 65.9 54 64.8
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 4.0e-09 65.5 94 48.9
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 4.0e-09 65.5 95 50.5
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.0e-09 65.5 93 46.2
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 5.2e-09 65.1 105 49.5
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 5.2e-09 65.1 97 50.5
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 6.7e-09 64.7 97 50.5
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 6.7e-09 64.7 96 47.9
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.5e-08 63.5 93 45.2
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 1.5e-08 63.5 100 48.0
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.5e-08 63.5 100 48.0
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 2.0e-08 63.2 61 60.7
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 3.3e-08 62.4 69 50.7
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.3e-08 62.4 95 48.4
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 4.4e-08 62.0 95 47.4
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 4.4e-08 62.0 97 48.5
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 4.4e-08 62.0 97 45.4
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 5.7e-08 61.6 94 46.8
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 5.7e-08 61.6 63 58.7
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 9.7e-08 60.8 82 46.3
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 9.7e-08 60.8 90 48.9
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 1.3e-07 60.5 89 47.2
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.3e-07 60.5 54 64.8
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 1.7e-07 60.1 99 43.4
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 2.8e-07 59.3 101 43.6
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.8e-07 59.3 95 47.4
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 2.8e-07 59.3 92 51.1
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 3.7e-07 58.9 101 44.6
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.3e-07 58.2 98 42.9
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 6.3e-07 58.2 92 54.3
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.1e-06 57.4 89 44.9
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 4.1e-06 55.5 84 46.4
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 5.3e-06 55.1 94 51.1


User provided reference genes

Program Settings