Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 5.3e-215 750.7 380 100.0
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 5.3e-215 750.7 380 100.0
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-211 739.2 380 98.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.6e-211 739.2 380 98.9
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 3.0e-210 734.9 380 98.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-199 699.5 375 94.7
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.4e-178 629.8 382 87.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-178 629.4 382 87.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 5.2e-178 627.9 382 87.2
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-176 622.5 382 87.2
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.3e-173 612.5 379 85.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.5e-172 609.0 379 84.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 5.6e-172 607.8 375 86.9
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 8.0e-171 604.0 385 84.9
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.3e-164 580.9 379 80.2
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.2e-163 580.1 381 80.8
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 4.0e-162 575.1 379 80.2
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.8e-158 560.8 375 79.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.7e-142 509.2 391 70.8
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.6e-118 430.3 389 60.7
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.0e-117 427.6 251 86.5
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.1e-116 424.1 385 61.6
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 9.7e-116 421.0 365 62.2
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.1e-114 417.5 363 63.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.4e-114 417.2 402 57.7
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.8e-114 416.8 383 59.3
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.4e-114 416.4 379 60.4
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 6.9e-114 414.8 380 59.7
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 9.0e-114 414.5 370 62.2
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.5e-113 413.7 367 60.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 4.5e-113 412.1 383 59.8
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 7.7e-113 411.4 380 59.7
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 7.7e-113 411.4 383 59.8
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 7.7e-113 411.4 376 60.4
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 7.7e-113 411.4 376 60.4
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.7e-112 410.2 367 61.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.7e-112 410.2 370 61.1
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.8e-112 409.1 371 58.8
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.8e-112 409.1 371 58.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.0e-112 408.7 359 61.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 5.0e-112 408.7 392 57.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.1e-111 407.5 376 60.4
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.1e-111 407.5 375 59.2
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 7.2e-111 404.8 382 59.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 7.2e-111 404.8 366 60.4
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 9.4e-111 404.4 358 60.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.2e-110 404.1 363 60.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.1e-110 403.3 388 59.8
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.7e-110 402.9 358 60.3
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.6e-110 402.5 365 59.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.6e-110 402.5 382 58.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 4.6e-110 402.1 369 60.4
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 4.6e-110 402.1 358 59.8
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 6.1e-110 401.7 391 58.1
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.1e-110 401.7 363 60.3
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 7.9e-110 401.4 391 56.8
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.4e-109 400.6 371 58.8
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.4e-109 400.6 384 58.6
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.4e-109 400.6 371 59.6
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.4e-109 400.6 396 56.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.8e-109 400.2 370 58.9
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.3e-109 399.8 358 59.8
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 3.0e-109 399.4 381 57.7
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 6.7e-109 398.3 387 57.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.7e-109 398.3 368 59.2
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 6.7e-109 398.3 358 60.6
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.1e-108 397.5 366 59.6
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.1e-108 397.5 383 56.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.5e-108 397.1 378 58.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.5e-108 397.1 362 58.0
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.5e-108 397.1 369 60.2
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-108 396.7 371 59.3
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.0e-108 396.7 383 56.7
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 4.3e-108 395.6 373 58.2
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.3e-108 395.6 387 56.8
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 5.7e-108 395.2 371 59.3
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 5.7e-108 395.2 358 59.5
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 7.4e-108 394.8 358 59.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 7.4e-108 394.8 358 59.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 7.4e-108 394.8 389 56.8
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.3e-107 394.0 412 54.6
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 2.2e-107 393.3 389 56.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.8e-107 392.9 370 59.5
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.7e-107 392.5 368 59.5
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.7e-107 392.5 362 58.3
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.3e-107 391.7 369 60.4
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 6.3e-107 391.7 411 55.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 8.2e-107 391.3 367 57.5
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-106 391.0 388 57.7
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.4e-106 390.6 378 57.9
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-106 389.8 379 58.8
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.1e-106 389.4 372 58.1
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 6.9e-106 388.3 368 59.2
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 6.9e-106 388.3 367 58.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.1e-106 387.9 382 57.6
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.2e-105 387.5 418 53.6
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.2e-105 387.5 288 68.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.5e-105 387.1 376 58.2
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.5e-105 385.6 413 54.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.5e-105 385.6 288 67.7
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.0e-104 384.4 359 56.8
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.0e-104 384.4 345 58.6
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.3e-104 384.0 389 54.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 5.0e-104 382.1 387 57.9
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 6.5e-104 381.7 396 55.1
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-103 380.6 380 56.3
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.2e-103 379.4 366 57.1
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 4.2e-103 379.0 397 53.1
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 4.2e-103 379.0 383 53.8
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 7.2e-103 378.3 388 55.4
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 7.2e-103 378.3 379 54.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.2e-102 377.5 368 55.7
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.6e-102 377.1 288 66.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.1e-102 376.7 373 55.5
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.7e-102 375.6 376 57.2
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.7e-102 375.6 388 55.4
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.8e-101 373.6 337 59.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 9.7e-100 367.9 344 57.6
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 4.8e-99 365.5 408 51.7
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 8.2e-99 364.8 288 67.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.4e-98 363.2 409 51.8
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 5.9e-97 358.6 368 54.3
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 5.0e-96 355.5 387 51.2
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 5.0e-96 355.5 371 54.4
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 6.5e-96 355.1 365 50.1
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.5e-96 355.1 338 57.7
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 5.5e-95 352.1 394 53.3
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.7e-94 349.0 387 52.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 6.1e-94 348.6 382 52.9
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 3.3e-92 342.8 369 53.7
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.8e-90 337.0 291 56.4
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 3.8e-88 329.3 286 57.7
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.9e-87 327.0 505 42.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.3e-85 320.1 399 45.9
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.0e-84 317.0 275 60.7
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.7e-83 313.9 358 51.1
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 3.1e-82 309.7 171 91.8
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.1e-79 301.2 288 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.5e-79 300.1 380 45.8
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 4.2e-79 299.3 158 94.3
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.1e-62 243.8 199 65.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.1e-55 221.5 300 41.0
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-53 214.5 202 61.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.4e-53 214.5 283 40.6
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.8e-35 153.3 253 39.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 6.4e-27 125.9 131 58.8
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 8.7e-24 115.5 64 87.5
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.4e-21 107.5 252 33.3
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.5e-17 93.6 282 27.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.0e-16 92.0 156 38.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.3e-16 90.9 122 48.4
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 4.0e-13 80.1 71 54.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 7.4e-07 59.3 126 34.1


User provided reference genes

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