Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-60 235.7 116 100.0
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.8e-60 235.7 116 100.0
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.4e-57 225.3 116 95.7
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-56 221.9 116 94.8
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 3.5e-53 211.5 116 90.5
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 7.9e-53 210.3 116 89.7
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 7.9e-53 210.3 116 89.7
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.1e-51 206.5 116 84.5
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.3e-51 204.9 116 85.3
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.8e-50 201.8 116 82.8
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 6.3e-50 200.7 116 83.6
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.4e-49 199.5 116 81.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 3.1e-49 198.4 114 82.5
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 5.3e-49 197.6 137 75.9
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 9.0e-49 196.8 116 81.0
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.2e-46 188.3 129 72.9
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.3e-44 182.2 111 76.6
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 73.0
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.5e-43 178.7 111 73.0
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 3.3e-43 178.3 116 72.4
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.3e-43 178.3 111 73.0
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 3.3e-43 178.3 114 73.7
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 4.3e-43 177.9 114 71.1
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.3e-43 177.9 111 73.0
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 5.7e-43 177.6 114 71.1
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 7.4e-43 177.2 114 70.2
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 7.4e-43 177.2 111 73.0
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.0
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 9.7e-43 176.8 114 72.8
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.9
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.0
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 9.7e-43 176.8 114 72.8
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.9
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 72.1
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.3e-42 176.4 112 71.4
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 72.1
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 72.1
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.0
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 72.1
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.3e-42 176.4 113 72.6
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.0
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 72.1
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 72.1
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.0
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 73.0
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 72.1
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 2.8e-42 175.3 109 72.5
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.8e-42 175.3 111 73.0
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 73.0
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 4.8e-42 174.5 111 72.1
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 6.3e-42 174.1 111 72.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 6.3e-42 174.1 111 71.2
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 8.2e-42 173.7 111 71.2
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 8.2e-42 173.7 114 69.3
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.1e-41 173.3 111 72.1
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.4e-41 172.9 114 68.4
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.4e-41 172.9 111 71.2
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.4e-41 172.9 111 71.2
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.8e-41 172.6 109 72.5
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.8e-41 172.6 111 73.0
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 70.3
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.4e-41 172.2 112 70.5
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.4e-41 172.2 109 73.4
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 73.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 68.5
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 72.1
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 4.1e-41 171.4 114 69.3
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 69.4
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.2e-40 169.9 114 68.4
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.0e-40 169.1 111 71.2
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 2.0e-40 169.1 112 67.9
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.6e-40 168.7 111 70.3
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 2.6e-40 168.7 111 70.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 3.4e-40 168.3 111 69.4
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 3.4e-40 168.3 111 70.3
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 4.5e-40 167.9 111 70.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 5.9e-40 167.5 111 69.4
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 5.9e-40 167.5 111 69.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 5.9e-40 167.5 111 69.4
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 7.7e-40 167.2 111 67.6
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.7e-39 166.0 111 70.3
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.7e-39 166.0 111 69.4
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.2e-39 165.6 111 68.5
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 5.0e-39 164.5 111 68.5
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 8.5e-39 163.7 111 65.8
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.5e-38 162.2 115 66.1
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 4.2e-38 161.4 111 66.7
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 5.5e-38 161.0 108 69.4
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 7.2e-38 160.6 109 66.1
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 6.1e-37 157.5 112 64.3
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 6.1e-37 157.5 108 67.6
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.4e-36 156.4 109 64.2
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.5e-35 152.9 135 56.3
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 7.4e-35 150.6 109 64.2
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 6.3e-34 147.5 110 60.0
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 3.1e-33 145.2 97 70.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 7.0e-33 144.1 99 63.6
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.1e-33 143.7 110 59.1
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.7e-31 139.4 109 59.6
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.7e-31 139.4 101 65.3
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 7.2e-30 134.0 106 61.3
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-28 129.4 75 86.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-28 129.4 75 86.7
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.0e-28 128.6 84 66.7
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 3.9e-28 128.3 74 81.1
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 6.7e-28 127.5 132 49.2
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.5e-27 126.3 81 69.1
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.5e-27 126.3 109 55.0
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 3.3e-27 125.2 84 71.4
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.3e-27 125.2 174 42.0
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 4.8e-26 121.3 111 51.4
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.3e-26 120.9 81 66.7
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.1e-25 118.6 109 49.5
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 7.7e-24 114.0 67 76.1
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 2.2e-23 112.5 112 51.8
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.1e-22 110.2 81 63.0
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.5e-22 109.8 76 67.1
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 7.2e-22 107.5 70 71.4
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.7e-21 104.8 62 75.8
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.7e-18 96.3 70 62.9
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.2e-18 95.9 82 53.7
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 6.3e-18 94.4 61 72.1
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 6.3e-18 94.4 59 69.5
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 1.1e-17 93.6 137 35.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.3e-17 91.3 54 74.1
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 5.0e-15 84.7 54 72.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 2.3e-12 75.9 48 68.8
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 8.3e-10 67.4 47 63.8
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 7.7e-08 60.8 60 46.7
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.5e-06 56.6 58 46.6
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 7.2e-06 54.3 46 56.5


User provided reference genes

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