Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 9.0e-116 420.2 208 100.0
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 1.3e-114 416.4 208 99.5
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 7.1e-113 410.6 205 98.5
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 2.1e-112 409.1 205 98.0
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 3.5e-112 408.3 205 97.6
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 4.6e-112 407.9 206 96.6
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 3.0e-111 405.2 205 96.6
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 3.0e-111 405.2 205 96.6
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 3.0e-111 405.2 205 96.6
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 3.9e-111 404.8 205 96.6
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-110 403.3 205 96.1
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 2.2e-109 399.1 205 94.1
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 2.8e-109 398.7 205 93.7
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 2.8e-109 398.7 206 93.2
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 4.8e-109 397.9 205 93.2
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 6.3e-109 397.5 205 93.2
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.4e-108 396.4 205 92.7
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.9e-105 386.0 204 90.7
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 5.9e-99 364.4 203 83.7
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.1e-89 333.6 170 95.3
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.8e-76 289.7 205 67.8
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.9e-73 279.6 207 64.7
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 2.1e-72 276.2 205 65.4
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 2.1e-72 276.2 204 67.6
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 4.7e-72 275.0 207 64.7
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 8.0e-72 274.2 203 66.0
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.4e-71 273.5 206 64.1
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.8e-71 273.1 206 65.0
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.2e-70 270.4 206 64.1
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 2.0e-70 269.6 204 64.7
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 4.4e-70 268.5 204 62.3
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 5.7e-70 268.1 203 65.5
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.3e-69 266.9 206 61.7
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.7e-69 266.5 200 64.0
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.2e-69 266.2 204 63.2
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 4.8e-69 265.0 202 64.4
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 8.3e-69 264.2 203 62.1
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 8.3e-69 264.2 206 62.1
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.1e-68 263.8 206 61.2
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.1e-68 263.8 203 64.0
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.4e-68 263.5 204 63.2
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 7.0e-68 261.2 203 63.5
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 9.1e-68 260.8 203 61.6
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 9.1e-68 260.8 206 60.2
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 5.9e-67 258.1 197 61.9
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 5.9e-67 258.1 206 59.7
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.0e-66 257.3 206 58.7
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.0e-66 257.3 206 58.7
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.0e-66 257.3 205 59.5
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.3e-66 256.9 204 60.8
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 1.7e-66 256.5 202 62.9
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.7e-66 256.5 205 59.5
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 1.7e-66 256.5 207 59.9
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.3e-66 256.1 205 60.0
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.9e-66 255.8 202 62.9
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.9e-66 255.8 202 62.9
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 2.9e-66 255.8 205 60.5
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.9e-66 255.8 205 60.5
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 2.9e-66 255.8 207 59.9
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.8e-66 255.4 205 60.5
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.0e-66 255.0 205 60.5
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 6.6e-66 254.6 205 60.5
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.6e-66 254.6 205 60.0
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 6.6e-66 254.6 199 61.3
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 8.6e-66 254.2 203 59.1
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 3.3e-65 252.3 203 61.1
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 3.3e-65 252.3 203 60.6
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 3.3e-65 252.3 203 60.6
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 4.2e-65 251.9 203 60.1
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 7.2e-65 251.1 203 59.6
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 9.5e-65 250.8 203 59.6
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 9.5e-65 250.8 203 59.6
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.1e-64 249.6 203 59.6
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.8e-64 249.2 205 58.5
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 2.8e-64 249.2 203 58.6
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.0e-63 247.3 205 58.0
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 1.4e-63 246.9 200 60.0
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.4e-63 246.9 219 57.1
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.0e-63 245.7 203 58.6
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 6.8e-63 244.6 203 58.6
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 2.6e-62 242.7 203 55.7
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 7.5e-62 241.1 202 57.9
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.7e-61 240.0 210 54.8
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.2e-61 239.6 203 60.1
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 4.9e-61 238.4 203 53.7
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.1e-60 237.3 200 57.0
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 4.1e-60 235.3 187 62.6
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.6e-59 233.4 203 53.2
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 4.5e-59 231.9 205 53.7
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.9e-58 229.2 202 56.4
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.1e-57 227.3 200 53.0
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 3.3e-57 225.7 200 53.5
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.2e-52 209.1 173 59.0
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.1e-48 196.4 200 51.0
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.1e-48 196.4 200 51.0
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.4e-47 193.7 167 56.9
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 5.2e-47 191.8 166 60.2
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 6.8e-47 191.4 166 60.2
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 3.7e-45 185.7 190 51.6
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 6.4e-45 184.9 203 48.8
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 1.0e-42 177.6 213 42.7
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-42 177.2 136 61.8
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 4.0e-39 165.6 141 57.4
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 5.8e-38 161.8 140 55.0
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 9.9e-38 161.0 206 43.7
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 1.7e-37 160.2 105 66.7
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 9.5e-33 144.4 105 61.9
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.1e-31 141.0 222 34.2
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 1.8e-31 140.2 108 59.3
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 3.8e-29 132.5 98 63.3
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 5.1e-26 122.1 106 53.8
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 9.6e-25 117.9 88 61.4
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 2.1e-24 116.7 89 61.8
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-20 104.4 56 91.1
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-20 104.4 52 98.1
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 1.9e-20 103.6 53 96.2
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 2.4e-20 103.2 52 96.2
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 2.4e-20 103.2 52 96.2
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 7.1e-20 101.7 52 94.2
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 3.9e-18 95.9 96 51.0
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 3.9e-18 95.9 96 51.0
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 3.9e-18 95.9 96 51.0
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 3.9e-18 95.9 96 51.0
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 3.9e-18 95.9 96 51.0
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 6.2e-16 88.6 140 37.1
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 1.1e-15 87.8 70 57.1
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.4e-07 60.1 74 45.9
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 4.0e-07 59.3 74 43.2
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 1.5e-06 57.4 47 51.1
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.6e-06 56.6 39 59.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 7.6e-06 55.1 39 56.4


User provided reference genes

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