Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 1.3e-182 642.9 319 100.0
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 9.4e-165 583.6 290 99.7
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 4.5e-159 564.7 290 96.2
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 4.5e-159 564.7 290 96.2
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 3.7e-153 545.0 290 93.1
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 3.1e-147 525.4 290 87.2
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 6.8e-147 524.2 290 87.9
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.3e-145 520.0 272 94.9
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 6.4e-145 517.7 290 88.3
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 2.4e-144 515.8 290 86.9
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 1.2e-132 476.9 297 79.8
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 7.6e-114 414.5 241 84.6
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 2.3e-110 402.9 289 66.8
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 2.5e-93 346.3 294 56.8
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 2.1e-92 343.2 293 56.3
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.8e-91 340.1 293 55.6
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 2.6e-90 336.3 293 55.3
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.3e-89 334.0 294 56.1
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 2.9e-89 332.8 293 54.6
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 5.0e-89 332.0 293 54.6
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 6.5e-89 331.6 293 54.3
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.1e-88 330.9 293 54.3
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 4.2e-88 328.9 293 56.0
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 7.2e-88 328.2 294 55.1
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 6.1e-87 325.1 293 53.9
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 7.9e-87 324.7 293 52.9
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.8e-86 323.6 293 52.2
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 1.8e-86 323.6 293 54.6
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 2.3e-86 323.2 293 54.9
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.3e-86 323.2 293 53.2
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 3.0e-86 322.8 293 54.9
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 3.3e-85 319.3 293 52.9
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 4.3e-85 318.9 293 51.9
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 9.7e-85 317.8 293 52.9
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 2.2e-84 316.6 293 53.9
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 4.8e-84 315.5 293 52.6
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 6.3e-84 315.1 292 53.8
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 8.2e-84 314.7 294 51.4
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 5.3e-83 312.0 293 51.9
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 6.9e-83 311.6 291 51.5
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 9.0e-83 311.2 294 51.4
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 1.2e-82 310.8 293 51.5
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 2.6e-82 309.7 294 51.0
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.6e-82 309.7 293 51.5
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 4.5e-82 308.9 293 51.9
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 4.5e-82 308.9 293 49.5
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 3.8e-81 305.8 268 55.6
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 8.5e-81 304.7 326 48.5
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.9e-80 303.5 294 50.7
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 3.2e-80 302.8 294 50.3
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 7.2e-80 301.6 303 50.2
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 3.6e-79 299.3 293 50.9
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 4.6e-79 298.9 293 51.2
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 6.1e-79 298.5 284 51.1
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 7.9e-79 298.1 293 50.2
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 1.4e-78 297.4 294 48.3
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.8e-78 297.0 294 50.3
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.8e-78 297.0 294 50.3
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 2.3e-78 296.6 293 50.5
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 2.3e-78 296.6 293 50.2
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 6.7e-78 295.0 293 49.5
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 6.7e-78 295.0 339 45.7
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 3.3e-77 292.7 284 49.3
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 5.7e-77 292.0 301 48.8
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 5.7e-77 292.0 294 48.6
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 7.4e-77 291.6 294 48.0
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 1.7e-76 290.4 291 49.8
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 1.7e-76 290.4 293 49.1
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.4e-75 287.3 294 49.7
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 3.1e-75 286.2 294 48.6
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 3.1e-75 286.2 293 48.5
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 4.1e-75 285.8 289 48.8
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 5.3e-75 285.4 415 40.0
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 5.9e-74 282.0 293 47.1
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 7.7e-74 281.6 293 49.1
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 1.0e-73 281.2 301 46.2
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 1.0e-73 281.2 294 46.3
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 2.2e-73 280.0 292 46.2
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 2.7e-71 273.1 294 48.3
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 1.0e-70 271.2 294 45.2
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.4e-70 270.8 294 48.0
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 5.1e-70 268.9 294 45.9
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 2.6e-69 266.5 342 42.1
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 9.7e-69 264.6 251 53.8
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 3.5e-66 256.1 242 53.3
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 2.2e-65 253.4 295 44.4
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 3.2e-64 249.6 267 48.7
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 7.2e-64 248.4 267 48.3
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 9.4e-64 248.1 294 42.9
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 5.2e-62 242.3 223 51.6
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 6.7e-62 241.9 297 43.1
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 1.1e-61 241.1 299 44.5
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 2.0e-61 240.4 223 50.2
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.0e-57 228.0 311 42.8
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 2.9e-57 226.5 242 47.5
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 8.5e-57 224.9 240 47.1
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 1.5e-56 224.2 287 38.3
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 1.4e-51 207.6 218 47.2
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 4.5e-50 202.6 284 36.3
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.7e-49 200.7 281 41.3
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 1.8e-46 190.7 229 44.5
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 1.4e-43 181.0 159 54.7
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 1.9e-40 170.6 241 40.2
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 4.4e-37 159.5 268 31.3
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.1e-27 128.3 100 57.0
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 9.8e-21 105.1 113 46.9
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 8.4e-12 75.5 64 57.8
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 5.4e-11 72.8 52 55.8
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 6.0e-10 69.3 52 55.8
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.7e-09 67.8 52 59.6
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.7e-09 67.8 52 59.6
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 1.5e-08 64.7 48 56.2


User provided reference genes

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