Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 2.9e-87 327.0 160 100.0
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 2.9e-87 327.0 160 100.0
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 8.9e-81 305.4 164 93.9
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 2.2e-79 300.8 164 92.1
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 7.1e-54 216.1 180 66.1
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 4.8e-50 203.4 180 57.8
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 1.1e-46 192.2 186 60.2
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 2.5e-46 191.0 185 60.0
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 3.9e-44 183.7 194 56.7
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.1e-43 182.2 190 56.8
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.8e-42 176.8 190 55.8
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 5.8e-40 169.9 173 50.9
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 7.6e-40 169.5 169 50.9
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 4.2e-38 163.7 169 50.9
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 7.1e-38 162.9 170 47.6
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 7.1e-38 162.9 170 47.6
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 3.5e-37 160.6 170 47.1
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 6.0e-37 159.8 150 52.0
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.0e-36 159.1 139 56.8
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 5.1e-36 156.8 157 51.0
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.3e-35 154.1 98 70.4
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 1.3e-34 152.1 152 53.9
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-33 149.1 128 54.7
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.8e-33 148.3 169 47.3
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 3.1e-33 147.5 151 49.0
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 9.0e-33 146.0 142 51.4
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 9.0e-33 146.0 128 54.7
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 9.0e-33 146.0 110 59.1
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 3.4e-32 144.1 164 45.7
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.5e-32 143.7 148 51.4
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.5e-32 143.7 148 51.4
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 4.5e-32 143.7 104 60.6
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.3e-31 142.1 108 62.0
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.7e-31 141.7 173 42.8
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.2e-31 141.4 148 50.0
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.9e-31 141.0 161 46.6
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 3.8e-31 140.6 177 45.8
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 3.8e-31 140.6 96 66.7
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 8.5e-31 139.4 110 57.3
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.4e-30 138.7 115 55.7
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.9e-30 138.3 150 46.0
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 2.5e-30 137.9 130 53.1
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 4.2e-30 137.1 170 42.9
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 4.2e-30 137.1 167 46.1
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 7.2e-30 136.3 104 56.7
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.2e-29 135.6 115 54.8
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 2.7e-29 134.4 151 43.0
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 4.6e-29 133.7 104 58.7
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 6.1e-29 133.3 155 47.1
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.4e-28 132.1 160 45.0
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 6.7e-28 129.8 131 46.6
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 9.7e-27 125.9 106 52.8
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.1e-25 122.5 168 37.5
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 4.1e-25 120.6 215 34.9
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 6.9e-25 119.8 169 40.2
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 4.5e-24 117.1 105 51.4
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 5.9e-24 116.7 141 42.6
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.0e-23 115.9 98 61.2
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.7e-23 115.2 76 68.4
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 3.8e-23 114.0 167 40.7
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 3.8e-23 114.0 128 45.3
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-23 114.0 128 45.3
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-23 114.0 128 45.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.0e-23 113.6 128 45.3
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 2.5e-22 111.3 139 42.4
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.1e-21 108.2 140 42.1
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.7e-21 107.8 173 38.2
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 2.7e-21 107.8 173 37.6
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 3.6e-21 107.5 122 46.7
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 6.1e-21 106.7 174 36.8
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.4e-20 105.5 174 37.9
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.8e-20 105.1 164 37.8
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 8.8e-20 102.8 170 36.5
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 1.1e-19 102.4 152 37.5
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.3e-18 99.0 169 36.1
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.7e-18 98.6 76 55.3
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 2.8e-18 97.8 132 40.9
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.8e-18 97.8 145 37.9
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 6.3e-18 96.7 80 52.5
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 8.2e-18 96.3 138 42.8
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.4e-17 94.7 72 59.7
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 7.0e-17 93.2 44 97.7
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 2.0e-16 91.7 155 36.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.7e-15 88.6 137 37.2
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 1.7e-15 88.6 149 35.6
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 5.0e-15 87.0 122 39.3
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 1.9e-14 85.1 219 28.8
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.2e-13 82.4 74 51.4
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.6e-13 82.0 136 36.0
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 2.1e-13 81.6 76 53.9
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 6.1e-13 80.1 72 48.6
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.3e-12 78.2 151 32.5
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 3.9e-12 77.4 68 52.9
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 8.8e-12 76.3 101 36.6
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-11 75.1 131 37.4
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 3.3e-11 74.3 43 72.1
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.4e-11 73.9 107 41.1
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.4e-11 73.9 107 41.1
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 9.7e-11 72.8 43 67.4
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.3e-10 72.4 43 72.1
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 6.3e-10 70.1 85 47.1
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 7.0e-09 66.6 48 68.8
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 5.9e-08 63.5 81 38.3
FAN18G1604 Fragaria x ananassa HOM05D002453 ORTHO05D008746 5.9e-08 63.5 81 38.3
Zm00001eb151420 Zea mays HOM05D037632 ORTHO05D009568 1.3e-07 62.4 67 41.8
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.2e-07 61.6 85 40.0
CDE12G0214 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 5.0e-07 60.5 89 33.7
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 8.5e-07 59.7 87 39.1
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 8.5e-07 59.7 87 39.1
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 8.5e-07 59.7 87 39.1
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 8.5e-07 59.7 87 39.1
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.1e-06 59.3 98 31.6
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 1.5e-06 58.9 97 30.9
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.9e-06 58.5 97 34.0
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.5e-06 58.2 87 37.9
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 3.2e-06 57.8 89 32.6
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.5e-06 57.0 100 31.0
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 5.5e-06 57.0 88 37.5
CDE06G0674 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 5.5e-06 57.0 94 33.0
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 5.5e-06 57.0 99 29.3
Manes.03G175400 Manihot esculenta HOM05D000424 ORTHO05D000355 5.5e-06 57.0 98 29.6
BcaB05g22690 Brassica carinata HOM05D000162 ORTHO05D000003 7.2e-06 56.6 84 36.9
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 7.2e-06 56.6 98 29.6
FvH4_5g12530 Fragaria vesca HOM05D002453 ORTHO05D008746 7.2e-06 56.6 81 37.0
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 7.2e-06 56.6 98 29.6
Actinidia21529 Actinidia chinensis HOM05D005973 ORTHO05D007285 9.4e-06 56.2 94 34.0
CDE07G0667 Ceratophyllum demersum HOM05D001587 ORTHO05D002654 9.4e-06 56.2 100 33.0
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 9.4e-06 56.2 111 32.4


User provided reference genes

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