Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 5.7e-212 740.7 394 100.0
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 7.7e-209 730.3 394 98.5
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 2.3e-184 649.0 397 90.2
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.9e-183 646.0 399 89.7
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.9e-183 646.0 397 89.7
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 9.8e-172 607.1 401 82.0
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.9e-170 602.8 401 83.3
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.2e-156 557.0 401 76.3
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.9e-155 552.4 398 69.8
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.6e-153 546.6 399 75.2
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.9e-151 539.7 401 73.8
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 9.6e-151 537.3 401 69.3
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 2.1e-150 536.2 401 69.3
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 4.8e-150 535.0 401 69.3
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 8.1e-150 534.3 401 69.1
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 8.1e-150 534.3 401 69.1
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 3.1e-149 532.3 397 73.6
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.7e-147 526.6 397 72.3
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 3.8e-147 525.4 401 69.1
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.5e-140 503.4 388 70.4
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 8.4e-139 497.7 378 67.2
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 6.0e-137 491.5 399 63.4
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 5.1e-136 488.4 386 65.5
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 5.6e-135 485.0 399 60.7
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 5.6e-135 485.0 397 63.0
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 7.4e-135 484.6 399 60.7
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 4.8e-134 481.9 397 62.7
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 8.2e-134 481.1 392 64.3
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 1.1e-133 480.7 388 67.8
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 4.0e-133 478.8 391 61.4
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 1.5e-132 476.9 398 64.8
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.7e-131 473.4 394 59.9
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.9e-131 472.6 388 60.8
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 1.9e-130 469.9 394 64.7
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.2e-130 469.2 392 62.2
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.2e-129 467.2 364 70.1
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.2e-129 467.2 388 61.1
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.6e-129 466.8 384 60.4
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 2.7e-129 466.1 384 60.9
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 7.9e-129 464.5 384 60.4
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 1.8e-128 463.4 384 62.0
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 3.0e-128 462.6 388 66.5
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 3.0e-128 462.6 392 59.2
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.9e-128 462.2 392 63.0
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 5.1e-128 461.8 384 61.7
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 6.7e-128 461.5 416 58.2
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.9e-127 459.9 392 58.4
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 2.5e-127 459.5 391 65.7
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 2.5e-127 459.5 395 59.5
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 3.3e-127 459.1 388 59.8
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 4.3e-127 458.8 390 60.0
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 5.7e-127 458.4 314 83.8
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 5.7e-127 458.4 395 59.2
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 7.4e-127 458.0 401 64.3
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.6e-126 456.8 383 59.8
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.3e-126 454.9 388 59.3
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 8.2e-126 454.5 388 62.1
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.8e-125 453.4 388 59.5
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 2.4e-125 453.0 399 60.2
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.4e-125 453.0 388 59.0
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 3.1e-125 452.6 314 83.4
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 1.5e-124 450.3 388 64.9
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.4e-124 449.1 394 58.1
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 7.6e-124 448.0 387 60.7
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 7.6e-124 448.0 438 60.0
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 1.3e-123 447.2 395 57.5
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 2.2e-123 446.4 386 57.8
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 2.2e-123 446.4 469 53.5
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 5.0e-123 445.3 388 59.3
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.4e-122 443.7 384 57.0
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.9e-122 443.4 386 57.5
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 2.5e-122 443.0 384 58.1
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 4.2e-122 442.2 389 57.6
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 7.2e-122 441.4 389 57.3
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 7.2e-122 441.4 386 58.0
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 9.3e-122 441.0 388 62.6
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.2e-121 440.7 384 56.8
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 2.1e-121 439.9 327 64.5
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 3.6e-121 439.1 389 57.1
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.0e-120 437.6 320 79.1
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.0e-120 436.0 388 58.0
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 3.9e-120 435.6 388 58.8
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 7.4e-119 431.4 388 55.9
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 4.8e-118 428.7 385 53.5
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 1.1e-117 427.6 327 63.6
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 5.3e-117 425.2 390 56.2
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 1.5e-116 423.7 301 67.4
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 1.3e-115 420.6 336 69.3
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 4.2e-114 415.6 394 54.3
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 3.3e-111 406.0 394 52.8
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 4.5e-108 395.6 261 86.6
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.0e-107 394.4 394 54.3
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 1.2e-105 387.5 321 61.7
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 3.6e-105 386.0 275 76.0
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 3.0e-104 382.9 301 63.5
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.1e-101 374.4 386 50.3
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.1e-101 374.4 391 50.6
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 1.6e-100 370.5 254 68.9
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 2.0e-100 370.2 382 52.4
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 5.0e-99 365.5 388 51.0
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 1.2e-97 360.9 388 54.9
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.6e-97 360.5 326 56.7
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.6e-97 360.5 254 74.4
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 8.0e-97 358.2 254 74.4
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 5.0e-91 339.0 477 43.6
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 2.5e-90 336.7 335 59.1
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.2e-89 334.3 368 49.7
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 2.0e-84 317.0 345 52.8
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 7.2e-82 308.5 281 57.3
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 7.0e-77 292.0 299 51.2
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 1.2e-76 291.2 390 44.1
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.6e-73 280.8 315 47.0
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.3e-67 261.2 208 62.0
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 9.5e-58 228.4 296 43.6
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-56 224.9 340 45.0
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 2.0e-55 220.7 243 53.1
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 4.6e-52 209.5 300 45.7
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 3.2e-45 186.8 205 41.5
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 9.2e-45 185.3 184 55.4
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 4.3e-34 149.8 155 52.9
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 4.8e-33 146.4 110 65.5
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 5.3e-32 142.9 308 33.1
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 2.0e-31 141.0 83 84.3
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 2.6e-31 140.6 83 83.1
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 3.4e-31 140.2 83 81.9
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.2e-29 133.7 129 57.4
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 8.7e-27 125.6 152 48.7
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 4.3e-26 123.2 147 50.3
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.6e-25 121.3 149 47.0
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 3.7e-25 120.2 148 49.3
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 2.0e-23 114.4 282 28.0
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 2.0e-23 114.4 81 61.7
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 5.8e-23 112.8 89 64.0
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 9.9e-23 112.1 81 60.5
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 6.4e-22 109.4 63 81.0
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 4.2e-21 106.7 385 29.1
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.3e-19 101.7 58 81.0
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 4.8e-09 66.6 124 40.3
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 1.0e-06 58.9 41 56.1
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 1.0e-06 58.9 42 52.4
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-06 58.5 42 54.8
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-06 58.5 42 54.8
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.7e-06 58.2 41 56.1
arahy.Tifrunner.gnm1.ann1.M9QEPL Arachis hypogaea HOM05D010413 ORTHO05D002299 3.8e-06 57.0 42 52.4


User provided reference genes

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