Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.8e-56 220.7 115 100.0
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.1e-46 189.9 101 97.0
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.5e-30 135.6 81 87.7
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.4e-17 93.2 84 59.5
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 2.0e-16 89.4 63 71.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.5e-16 88.2 78 59.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 7.7e-16 87.4 75 60.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 1.7e-15 86.3 75 60.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-15 86.3 75 60.0
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.7e-15 86.3 54 79.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 2.9e-15 85.5 65 67.7
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.9e-15 85.5 54 75.9
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 8.5e-15 84.0 81 59.3
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-14 83.6 54 75.9
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.1e-14 83.6 75 58.7
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 2.5e-14 82.4 75 60.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 2.5e-14 82.4 75 58.7
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 2.5e-14 82.4 75 58.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 2.5e-14 82.4 54 75.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.5e-14 82.4 54 74.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.5e-14 82.4 54 74.1
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.5e-14 82.4 54 74.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 7.2e-14 80.9 54 72.2
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 2.7e-13 79.0 65 64.6
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.6e-13 78.6 52 71.2
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.6e-13 78.6 52 71.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 3.6e-13 78.6 52 71.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 7.9e-13 77.4 54 68.5
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.3e-12 75.9 54 70.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 5.1e-12 74.7 54 68.5
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 5.1e-12 74.7 87 49.4
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 5.1e-12 74.7 64 60.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 6.7e-12 74.3 54 68.5
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 8.8e-12 73.9 81 55.6
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.1e-11 73.6 75 52.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.1e-11 73.6 65 60.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 1.1e-11 73.6 65 60.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 1.5e-11 73.2 64 57.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.5e-11 73.2 54 66.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 2.0e-11 72.8 52 69.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 3.3e-11 72.0 54 66.7
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 3.3e-11 72.0 64 57.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 5.7e-11 71.2 53 71.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 5.7e-11 71.2 53 71.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 5.7e-11 71.2 65 60.0
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 5.7e-11 71.2 76 52.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 5.7e-11 71.2 64 54.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 5.7e-11 71.2 75 50.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 7.4e-11 70.9 64 57.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 7.4e-11 70.9 74 52.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 7.4e-11 70.9 64 56.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 7.4e-11 70.9 63 58.7
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 7.4e-11 70.9 74 54.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.3e-10 70.1 64 57.8
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.3e-10 70.1 65 60.0
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 1.3e-10 70.1 65 58.5
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 1.3e-10 70.1 66 56.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 1.7e-10 69.7 64 56.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 1.7e-10 69.7 65 58.5
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 1.7e-10 69.7 64 57.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 1.7e-10 69.7 65 58.5
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.7e-10 69.7 65 58.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 2.2e-10 69.3 54 64.8
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 2.2e-10 69.3 54 61.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 2.2e-10 69.3 65 55.4
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 2.2e-10 69.3 64 57.8
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.2e-10 69.3 54 57.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 2.8e-10 68.9 74 52.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 2.8e-10 68.9 70 54.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 2.8e-10 68.9 65 55.4
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 2.8e-10 68.9 67 55.2
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 3.7e-10 68.6 54 63.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 3.7e-10 68.6 65 56.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 4.8e-10 68.2 76 48.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 4.8e-10 68.2 75 52.0
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 4.8e-10 68.2 65 56.9
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 8.2e-10 67.4 64 56.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 8.2e-10 67.4 75 52.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 8.2e-10 67.4 75 52.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.2e-10 67.4 54 64.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 8.2e-10 67.4 65 56.9
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 8.2e-10 67.4 65 58.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 1.1e-09 67.0 54 66.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 1.8e-09 66.2 54 64.8
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 1.8e-09 66.2 54 64.8
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 2.4e-09 65.9 65 56.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 3.1e-09 65.5 62 53.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 3.1e-09 65.5 65 55.4
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 4.1e-09 65.1 65 53.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 4.1e-09 65.1 65 55.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 4.1e-09 65.1 63 50.8
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 5.3e-09 64.7 54 61.1
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.9e-09 64.3 52 59.6
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.9e-09 64.3 52 59.6
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 4.5e-08 61.6 63 54.0
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 4.5e-08 61.6 52 59.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 7.7e-08 60.8 65 53.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.0e-07 60.5 54 61.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.7e-07 59.7 54 57.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.7e-07 59.7 73 46.6
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.2e-07 59.3 62 51.6
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 3.8e-07 58.5 65 50.8
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 8.5e-07 57.4 62 50.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 2.5e-06 55.8 64 51.6
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 7.2e-06 54.3 64 50.0


User provided reference genes

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