Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-188 662.9 327 100.0
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.3e-188 662.9 327 100.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 2.5e-173 612.1 330 92.1
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 4.3e-173 611.3 328 92.4
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-172 609.8 330 91.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.8e-172 608.6 328 91.8
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 4.8e-172 607.8 328 92.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 4.8e-172 607.8 319 95.0
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 8.5e-169 597.0 332 89.2
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.1e-165 586.6 335 87.8
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-164 583.2 329 89.1
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.8e-164 582.0 340 85.6
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.7e-164 581.6 335 86.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 5.9e-162 574.3 335 88.1
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 6.7e-158 560.8 334 83.8
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 8.8e-158 560.5 321 86.0
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-153 546.2 324 80.9
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.7e-153 546.2 324 80.9
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 6.5e-153 544.3 329 80.2
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-152 543.5 324 80.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-152 543.1 328 79.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.6e-151 538.5 321 82.2
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.0e-150 537.0 337 77.7
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 9.7e-149 530.4 324 79.6
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 6.5e-145 517.7 305 80.0
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 8.5e-145 517.3 320 78.1
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 5.5e-144 514.6 331 75.8
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.7e-143 512.3 324 77.5
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.6e-141 505.8 324 75.9
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.7e-140 503.1 333 73.9
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.1e-139 500.4 334 73.7
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 4.1e-139 498.4 328 75.3
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.5e-138 495.4 325 75.1
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 4.5e-138 495.0 337 71.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 4.5e-138 495.0 344 70.9
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.3e-137 493.4 334 73.1
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.3e-137 493.4 343 71.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.1e-136 490.3 332 72.3
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.9e-136 489.6 339 71.7
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.5e-136 489.2 334 72.5
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 4.2e-136 488.4 330 71.5
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.2e-136 487.6 341 72.1
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.2e-135 486.9 329 73.3
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.1e-135 486.1 330 72.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.6e-135 485.3 333 72.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.1e-135 484.6 327 72.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 8.0e-135 484.2 330 72.4
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.8e-134 483.0 332 72.0
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.2e-133 480.3 326 71.5
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.0e-133 479.6 334 71.3
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.4e-133 478.8 343 70.6
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.4e-133 478.4 326 71.8
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.4e-133 478.4 324 72.5
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 5.7e-133 478.0 316 72.5
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.3e-132 476.9 324 72.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.3e-132 476.9 324 72.5
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.7e-132 476.5 326 72.1
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 3.7e-132 475.3 321 73.2
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.1e-131 473.8 330 70.6
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.4e-131 473.4 294 76.5
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.4e-131 473.4 263 83.7
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 3.1e-131 472.2 351 67.2
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.1e-131 472.2 316 74.7
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.4e-131 471.5 327 70.6
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.7e-130 469.2 329 69.3
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.9e-130 468.0 266 80.8
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 7.7e-130 467.6 323 71.5
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.0e-129 467.2 266 80.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.0e-129 467.2 324 70.4
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.7e-129 466.5 331 68.9
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.7e-129 466.5 332 69.9
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 2.9e-129 465.7 327 70.0
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 5.0e-129 464.9 329 69.3
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 8.6e-129 464.2 331 70.4
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 8.6e-129 464.2 263 81.4
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 8.6e-129 464.2 281 77.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.1e-128 463.8 343 68.2
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.1e-128 463.8 343 68.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.9e-128 463.0 336 70.2
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 3.3e-128 462.2 263 80.6
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.3e-128 462.2 263 80.6
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 3.3e-128 462.2 300 74.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 5.5e-128 461.5 324 68.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.5e-128 461.5 334 69.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.2e-128 461.1 292 75.7
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 7.2e-128 461.1 263 80.2
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.2e-127 460.3 334 69.8
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.1e-127 459.5 328 71.0
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.8e-127 459.1 318 70.1
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 4.7e-127 458.4 324 69.1
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 8.0e-127 457.6 319 70.8
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.0e-126 457.2 261 79.7
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.8e-126 456.4 324 72.5
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.3e-126 456.1 274 78.8
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 4.0e-126 455.3 348 66.7
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.2e-126 454.9 322 67.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.0e-125 453.0 261 79.3
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.0e-125 453.0 287 74.9
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 3.4e-125 452.2 263 79.8
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 4.4e-125 451.8 321 68.2
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.8e-125 450.7 266 78.9
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.3e-124 450.3 266 78.6
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.8e-124 449.1 323 66.9
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.9e-124 448.4 286 74.5
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.3e-124 447.6 286 74.1
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 4.1e-123 445.3 325 68.9
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 5.4e-123 444.9 287 73.9
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 5.4e-123 444.9 325 68.9
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.2e-123 444.1 259 79.2
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.7e-122 442.6 272 77.2
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.5e-122 442.2 322 68.0
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 6.6e-121 438.0 320 67.5
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 9.5e-120 434.1 242 83.9
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.6e-119 433.3 332 66.3
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.0e-117 426.4 328 64.0
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 9.8e-117 424.1 240 81.2
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.0e-114 416.4 233 82.4
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 8.6e-113 411.0 260 73.5
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.9e-112 409.8 231 83.5
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 7.3e-112 407.9 268 71.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 4.7e-111 405.2 266 71.4
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-109 400.2 214 84.6
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.0e-109 399.8 320 63.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.7e-108 396.7 217 82.5
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.9e-107 393.3 219 81.3
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-107 392.1 219 82.6
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.4e-107 391.7 321 60.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 7.8e-106 387.9 219 79.5
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.0e-105 386.0 218 82.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 4.7e-103 378.6 264 66.7
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.8e-102 376.7 319 61.4
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 7.5e-101 371.3 208 83.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.8e-95 352.8 218 72.5
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.6e-95 352.4 216 85.2
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 5.8e-93 345.1 298 58.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 7.1e-91 338.2 290 60.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-84 317.4 215 74.0
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 2.2e-84 316.6 230 63.0
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 3.8e-84 315.8 208 76.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.5e-80 303.1 225 68.9
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 3.2e-75 286.2 152 85.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.0e-73 281.2 162 80.2
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.4e-70 270.8 237 59.9
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 3.7e-63 246.1 149 76.5
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.8e-63 245.7 213 60.6
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.4e-54 217.6 125 80.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.1e-54 216.5 177 66.1
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.9e-54 215.3 146 68.5
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.0e-32 144.1 112 68.8
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.8e-17 94.4 81 58.0
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 5.2e-17 92.8 49 83.7
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 8.3e-15 85.5 109 49.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.1e-14 83.6 102 44.1


User provided reference genes

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