Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 2.1e-157 558.9 272 100.0
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 7.6e-155 550.4 272 98.5
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 2.1e-144 515.8 274 93.1
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 6.6e-143 510.8 274 92.3
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.8e-140 502.7 273 90.5
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 9.9e-139 496.9 274 89.4
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.0e-127 460.3 275 82.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 1.9e-126 456.1 278 82.0
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 4.1e-116 421.8 279 74.2
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 2.0e-115 419.5 279 74.9
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 4.2e-113 411.8 277 71.5
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 6.7e-103 377.9 253 68.4
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 4.0e-87 325.5 270 59.3
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 8.8e-87 324.3 255 59.6
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 9.7e-86 320.9 265 59.2
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 2.2e-85 319.7 273 57.5
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 2.8e-85 319.3 265 58.5
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 6.3e-85 318.2 262 56.5
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 8.2e-85 317.8 270 56.7
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 9.1e-84 314.3 207 75.4
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.2e-83 313.9 269 53.5
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.7e-83 312.8 270 55.9
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.3e-82 310.5 253 56.9
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 5.0e-82 308.5 269 56.5
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 8.5e-82 307.8 266 56.4
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 1.5e-81 307.0 260 58.5
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.9e-81 306.6 263 54.8
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.5e-81 306.2 262 58.4
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 4.2e-81 305.4 255 58.4
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 7.2e-81 304.7 268 54.5
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 9.4e-81 304.3 262 58.0
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.6e-80 303.5 262 57.3
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 2.7e-80 302.8 262 56.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 3.6e-80 302.4 228 62.3
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 4.7e-80 302.0 256 57.8
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.8e-79 300.1 262 55.0
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 2.3e-79 299.7 286 51.0
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 3.0e-79 299.3 264 56.8
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 5.2e-79 298.5 270 55.2
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 5.2e-79 298.5 262 56.1
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 5.2e-79 298.5 257 54.9
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.2e-78 297.4 266 55.3
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 2.6e-78 296.2 257 56.0
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.3e-77 293.9 257 55.3
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 2.8e-77 292.7 263 54.0
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 4.8e-77 292.0 257 56.0
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 8.3e-77 291.2 253 57.3
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.4e-76 290.4 254 54.7
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 2.4e-76 289.7 254 55.5
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.4e-76 289.7 257 54.5
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 3.1e-76 289.3 262 52.7
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 9.1e-76 287.7 265 55.8
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 1.6e-75 287.0 271 51.3
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 2.7e-75 286.2 209 69.4
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 7.7e-75 284.6 265 54.3
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 5.0e-74 282.0 255 53.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 5.0e-74 282.0 259 54.8
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 8.5e-74 281.2 260 52.7
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 1.5e-73 280.4 267 50.9
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 2.5e-73 279.6 258 53.9
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 3.2e-73 279.3 258 53.9
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 4.2e-73 278.9 264 51.1
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 7.2e-73 278.1 266 52.3
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 9.4e-73 277.7 257 51.4
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.2e-72 277.3 258 53.5
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 2.7e-72 276.2 262 50.4
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 8.0e-72 274.6 255 53.3
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 8.0e-72 274.6 270 52.6
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 5.2e-71 271.9 256 50.0
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 1.2e-70 270.8 263 50.6
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.5e-70 270.4 243 56.8
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.6e-70 269.6 272 49.3
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 4.4e-70 268.9 262 49.2
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 7.5e-70 268.1 268 50.7
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.3e-69 267.3 253 54.5
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 6.3e-69 265.0 256 51.6
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 6.3e-69 265.0 276 47.5
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.4e-68 263.8 225 56.0
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 4.1e-68 262.3 263 49.8
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 9.2e-68 261.2 258 49.2
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.2e-67 260.8 258 50.8
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 5.9e-67 258.5 255 52.2
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 1.0e-66 257.7 238 54.2
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 3.8e-66 255.8 254 49.6
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 9.5e-65 251.1 273 46.9
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 2.1e-64 250.0 239 51.0
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 2.8e-64 249.6 237 51.5
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 8.0e-64 248.1 272 46.0
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 3.0e-63 246.1 253 47.0
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 4.0e-63 245.7 238 50.0
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 5.2e-63 245.4 175 62.3
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 3.4e-62 242.7 237 50.6
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.8e-60 236.9 237 50.6
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 7.0e-60 235.0 233 50.2
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 4.6e-59 232.3 235 47.7
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 2.1e-56 223.4 234 44.9
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 4.7e-56 222.2 210 50.0
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.0e-55 221.1 246 45.9
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 6.8e-55 218.4 237 43.5
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 4.9e-53 212.2 270 42.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.6e-50 201.8 251 39.8
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 2.8e-48 196.4 148 59.5
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 4.3e-41 172.6 175 50.3
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 5.6e-41 172.2 245 42.4
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 2.1e-40 170.2 191 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 4.0e-39 166.0 249 36.9
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.9e-36 157.1 220 40.5
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 3.9e-34 149.4 203 40.4
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 4.3e-33 146.0 237 38.0
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 3.6e-32 142.9 222 37.4
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 7.6e-30 135.2 239 35.6
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 2.2e-29 133.7 240 34.6
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.9e-28 130.6 252 34.1
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 4.2e-28 129.4 138 53.6
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.7e-26 124.0 174 39.1
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 5.1e-26 122.5 88 60.2
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 1.5e-22 110.9 128 46.9
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 1.1e-20 104.8 121 49.6
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 5.6e-17 92.4 103 51.5
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.8e-16 90.1 106 45.3
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.8e-15 87.4 59 66.1
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 5.3e-15 85.9 103 41.7
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.4e-12 77.8 267 26.2
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 1.2e-11 74.7 275 26.2
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.2e-11 74.7 273 26.7
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.7e-11 73.6 272 25.7
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 7.9e-11 72.0 120 37.5
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 3.9e-10 69.7 273 25.6
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 5.1e-10 69.3 126 34.1
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 5.1e-10 69.3 224 29.0
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.9e-09 67.4 67 47.8
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 2.5e-09 67.0 263 23.2
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 4.3e-09 66.2 314 22.6
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 5.6e-09 65.9 268 24.6
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 1.3e-08 64.7 273 23.4
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 2.1e-08 63.9 265 23.0
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 3.7e-08 63.2 279 25.1
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 8.1e-08 62.0 278 24.8
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 2.4e-07 60.5 274 25.5
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 2.4e-07 60.5 288 22.2
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 2.4e-07 60.5 282 23.4
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 5.3e-07 59.3 278 24.1
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 6.9e-07 58.9 302 24.8
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 9.0e-07 58.5 120 35.0
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.5e-06 57.8 255 24.7
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 2.0e-06 57.4 276 22.8
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 2.6e-06 57.0 266 22.2
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 4.5e-06 56.2 262 23.7
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 5.8e-06 55.8 104 34.6


User provided reference genes

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