Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p41120 Brassica napus HOM05D004974 ORTHO05D001537 8.6e-63 243.4 118 100.0
BraA05t22838Z Brassica rapa HOM05D004974 ORTHO05D001537 3.0e-55 218.4 106 100.0
BolC5t34678H Brassica oleracea HOM05D004974 ORTHO05D001537 1.1e-25 120.2 115 61.7
A03p35060 Brassica napus HOM05D004974 ORTHO05D001537 7.1e-25 117.5 115 61.7
C03p42640 Brassica napus HOM05D004974 ORTHO05D001537 7.1e-25 117.5 115 61.7
BolC3t16534H Brassica oleracea HOM05D004974 ORTHO05D001537 7.1e-25 117.5 115 61.7
BraA03t12686Z Brassica rapa HOM05D004974 ORTHO05D001537 7.1e-25 117.5 115 61.7
COL.COLO4_08178 Corchorus olitorius HOM05D004974 ORTHO05D001537 7.1e-25 117.5 136 52.9
Atru.chr5.2001 Acer truncatum HOM05D004974 ORTHO05D001537 9.3e-25 117.1 136 52.9
MD04G1105300 Malus domestica HOM05D004974 ORTHO05D001537 9.3e-25 117.1 115 58.3
MD10G1165300 Malus domestica HOM05D004974 ORTHO05D001537 9.3e-25 117.1 115 58.3
BraA01t04399Z Brassica rapa HOM05D004974 ORTHO05D001537 3.5e-24 115.2 115 60.0
Sp3g06020 Schrenkiella parvula HOM05D004974 ORTHO05D001537 3.5e-24 115.2 115 61.7
MD05G1176600 Malus domestica HOM05D004974 ORTHO05D001537 4.6e-24 114.8 115 57.4
C05p60300 Brassica napus HOM05D004974 ORTHO05D001537 7.8e-24 114.0 115 61.7
Thhalv10020757m.g Eutrema salsugineum HOM05D004974 ORTHO05D001537 7.8e-24 114.0 115 60.0
PGR044G1568 Punica granatum HOM05D004974 ORTHO05D001537 1.3e-23 113.2 136 52.2
RcHm_v2.0_Chr6g0284971 Rosa chinensis HOM05D004974 ORTHO05D001537 1.3e-23 113.2 115 56.5
FvH4_2g19180 Fragaria vesca HOM05D004974 ORTHO05D001537 3.9e-23 111.7 115 55.7
FAN15G2952 Fragaria x ananassa HOM05D004974 ORTHO05D001537 3.9e-23 111.7 115 55.7
FAN24G0854 Fragaria x ananassa HOM05D004974 ORTHO05D001537 3.9e-23 111.7 115 55.7
BolC1t05570H Brassica oleracea HOM05D004974 ORTHO05D001537 5.1e-23 111.3 115 58.3
Aa31LG5G17640 Aethionema arabicum HOM05D004974 ORTHO05D001537 6.6e-23 110.9 115 55.7
ClCG07G001900 Citrullus lanatus HOM05D004974 ORTHO05D001537 6.6e-23 110.9 136 53.7
Nn1g07839 Nelumbo nucifera HOM05D004974 ORTHO05D001537 6.6e-23 110.9 114 55.3
HanXRQChr16g0532351 Helianthus annuus HOM05D004974 ORTHO05D001537 8.7e-23 110.5 138 49.3
Carub.0003s0659 Capsella rubella HOM05D004974 ORTHO05D001537 1.1e-22 110.2 115 58.3
Duzib133G1519 Durio zibethinus HOM05D004974 ORTHO05D001537 1.1e-22 110.2 136 51.5
Oeu022257.1 Olea europaea HOM05D004974 ORTHO05D001537 1.1e-22 110.2 115 53.9
Sed0026000 Sechium edule HOM05D004974 ORTHO05D001537 1.1e-22 110.2 136 52.9
AL3G18310 Arabidopsis lyrata HOM05D004974 ORTHO05D001537 1.5e-22 109.8 115 57.4
AT3G07080 Arabidopsis thaliana HOM05D004974 ORTHO05D001537 1.5e-22 109.8 115 57.4
CARHR081670 Cardamine hirsuta HOM05D004974 ORTHO05D001537 1.5e-22 109.8 115 57.4
CSS0031489 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 1.9e-22 109.4 115 54.8
CSS0012166 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 2.5e-22 109.0 115 54.8
PSO017G1462 Papaver somniferum HOM05D004974 ORTHO05D001537 2.5e-22 109.0 114 55.3
PSO063G7040 Papaver somniferum HOM05D004974 ORTHO05D001537 2.5e-22 109.0 114 55.3
THA.LOC104802676 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 2.5e-22 109.0 136 50.7
Actinidia30081 Actinidia chinensis HOM05D004974 ORTHO05D001537 3.3e-22 108.6 115 55.7
C07p01960 Brassica napus HOM05D004974 ORTHO05D001537 3.3e-22 108.6 115 60.0
unitig_749.g13727 Utricularia gibba HOM05D004974 ORTHO05D001537 4.3e-22 108.2 115 54.8
CsaV3_3G029890 Cucumis sativus L. HOM05D004974 ORTHO05D001537 5.6e-22 107.8 136 52.2
Gohir.A11G137200 Gossypium hirsutum HOM05D004974 ORTHO05D001537 5.6e-22 107.8 115 54.8
Peaxi162Scf00107g00164 Petunia axillaris HOM05D004974 ORTHO05D001537 5.6e-22 107.8 137 49.6
BolC7t41758H Brassica oleracea HOM05D004974 ORTHO05D001537 7.3e-22 107.5 115 60.0
Dinv19208 Davidia involucrata HOM05D004974 ORTHO05D000168 7.3e-22 107.5 115 56.5
Gohir.D11G143600 Gossypium hirsutum HOM05D004974 ORTHO05D001537 7.3e-22 107.5 115 54.8
Gorai.007G153800 Gossypium raimondii HOM05D004974 ORTHO05D001537 7.3e-22 107.5 115 54.8
ECA232G3165 Erigeron canadensis HOM05D004974 ORTHO05D001537 9.6e-22 107.1 137 48.9
Hund18374 Selenicereus undatus HOM05D004974 ORTHO05D001537 9.6e-22 107.1 115 57.4
Rhsim13G0044600 Rhododendron simsii HOM05D004974 ORTHO05D001537 1.3e-21 106.7 115 56.5
Actinidia09484 Actinidia chinensis HOM05D000836 ORTHO05D000709 1.6e-21 106.3 115 55.7
BcaC06g36634 Brassica carinata HOM05D004974 ORTHO05D001537 2.1e-21 105.9 115 59.1
BolC7t40605H Brassica oleracea HOM05D004974 ORTHO05D001537 2.1e-21 105.9 115 59.1
Lj2C1132G7 Lonicera japonica HOM05D004974 ORTHO05D000168 2.1e-21 105.9 116 55.2
Cpa.g.sc8.163 Carica papaya HOM05D004974 ORTHO05D001537 2.8e-21 105.5 115 56.5
AUR62008904 Chenopodium quinoa HOM05D004974 ORTHO05D001537 2.8e-21 105.5 119 55.5
Ciclev10020126m.g Citrus clementina HOM05D004974 ORTHO05D001537 2.8e-21 105.5 136 50.7
Sed0019567 Sechium edule HOM05D004974 ORTHO05D001537 2.8e-21 105.5 137 48.9
EL10Ac3g05326 Beta vulgaris HOM05D004974 ORTHO05D001537 3.6e-21 105.1 119 55.5
Rhsim01G0256000 Rhododendron simsii HOM05D004974 ORTHO05D001537 6.2e-21 104.4 115 54.8
TWI36G0218 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 8.1e-21 104.0 115 54.8
Aqoxy2G03888 Aquilegia oxysepala HOM05D004974 ORTHO05D001537 1.1e-20 103.6 115 53.9
AUR62031806 Chenopodium quinoa HOM05D004974 ORTHO05D001537 1.1e-20 103.6 117 54.7
SalBow1G3148 Salvia bowleyana HOM05D004974 ORTHO05D001537 1.1e-20 103.6 115 51.3
Thecc.01G226800 Theobroma cacao HOM05D004974 ORTHO05D001537 1.1e-20 103.6 115 53.9
arahy.Tifrunner.gnm1.ann1.7S1X7X Arachis hypogaea HOM05D004974 ORTHO05D001537 1.4e-20 103.2 136 49.3
arahy.Tifrunner.gnm1.ann1.GEM3QE Arachis hypogaea HOM05D004974 ORTHO05D001537 1.4e-20 103.2 136 49.3
Nitab4.5_0000045g0090 Nicotiana tabacum HOM05D004974 ORTHO05D001537 1.4e-20 103.2 115 53.9
Nitab4.5_0006192g0010 Nicotiana tabacum HOM05D004974 ORTHO05D001537 1.4e-20 103.2 115 53.9
TWI18G1322 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 1.4e-20 103.2 115 54.8
GSVIVG01028650001 Vitis vinifera HOM05D004974 ORTHO05D001537 1.8e-20 102.8 115 53.0
Eucgr.K02174 Eucalyptus grandis HOM05D004974 ORTHO05D001537 2.4e-20 102.4 137 46.7
Eucgr.K02179 Eucalyptus grandis HOM05D004974 ORTHO05D001537 2.4e-20 102.4 137 46.7
Lalb_Chr01g0022381 Lupinus albus HOM05D004974 ORTHO05D001537 2.4e-20 102.4 136 49.3
Solyc09g061320.4 Solanum lycopersicum HOM05D004974 ORTHO05D001537 2.4e-20 102.4 115 53.9
Sopen09g024080 Solanum pennellii HOM05D004974 ORTHO05D001537 2.4e-20 102.4 115 53.9
TAR365G0028 Trochodendron aralioides HOM05D004974 ORTHO05D001537 2.4e-20 102.4 114 55.3
vmacro02753 Vaccinium macrocarpon HOM05D004974 ORTHO05D001537 3.1e-20 102.1 145 45.5
Os06g0681700 Oryza sativa ssp. japonica HOM05D004974 ORTHO05D001537 4.0e-20 101.7 115 54.8
Hund05533 Selenicereus undatus HOM05D004974 ORTHO05D001537 4.0e-20 101.7 119 52.1
Hund05537 Selenicereus undatus HOM05D004974 ORTHO05D001537 4.0e-20 101.7 119 52.1
MSTRG.18386 Avicennia marina HOM05D004974 ORTHO05D001537 6.9e-20 100.9 115 47.8
CAN.G900.32 Capsicum annuum HOM05D004974 ORTHO05D001537 6.9e-20 100.9 115 53.0
MSTRG.21423 Avicennia marina HOM05D004974 ORTHO05D001537 9.0e-20 100.5 115 47.8
Migut.D00531 Erythranthe guttata HOM05D004974 ORTHO05D001537 9.0e-20 100.5 111 53.2
Glyma.08G354800 Glycine max HOM05D004974 ORTHO05D001537 1.2e-19 100.1 115 54.8
CDE08G1692 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 1.5e-19 99.8 136 47.8
ATR0736G069 Amborella trichopoda HOM05D004974 ORTHO05D001537 2.0e-19 99.4 115 53.0
MELO3C026996.2 Cucumis melo HOM05D004974 ORTHO05D001537 2.0e-19 99.4 96 59.4
Sc17g0002410 Simmondsia chinensis HOM05D004974 ORTHO05D001537 2.0e-19 99.4 115 53.9
Manes.13G045300 Manihot esculenta HOM05D004974 ORTHO05D001537 2.6e-19 99.0 115 57.4
SGA_v2.0_scaffold1G00729 Striga asiatica HOM05D004974 ORTHO05D001537 3.4e-19 98.6 115 48.7
THA.LOC104818948 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 3.4e-19 98.6 115 53.9
TPR.G9031 Trifolium pratense HOM05D004974 ORTHO05D001537 3.4e-19 98.6 115 53.9
Lalb_Chr03g0041801 Lupinus albus HOM05D004974 ORTHO05D001537 4.5e-19 98.2 115 51.3
Psat3g144880 Pisum sativum HOM05D004974 ORTHO05D001537 4.5e-19 98.2 115 53.9
Sabra14G0144900 Salix brachista HOM05D004974 ORTHO05D001537 4.5e-19 98.2 114 53.5
Ca_07523_v3 Cicer arietinum L. HOM05D004974 ORTHO05D001537 5.8e-19 97.8 115 53.9
Potri.014G189500 Populus trichocarpa HOM05D004974 ORTHO05D001537 5.8e-19 97.8 114 53.5
Lj1g0028171 Lotus japonicus HOM05D004974 ORTHO05D001537 7.6e-19 97.4 115 53.9
Nn4g24998 Nelumbo nucifera HOM05D004974 ORTHO05D001537 7.6e-19 97.4 115 50.4
Zm00001eb273630 Zea mays HOM05D004974 ORTHO05D001537 7.6e-19 97.4 115 53.0
CDE02G3969 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 1.3e-18 96.7 136 46.3
Eucgr.G01752 Eucalyptus grandis HOM05D004974 ORTHO05D001537 1.3e-18 96.7 113 52.2
Medtr7g058520 Medicago truncatula HOM05D004974 ORTHO05D001537 1.3e-18 96.7 115 53.0
Zm00001eb225240 Zea mays HOM05D004974 ORTHO05D001537 1.3e-18 96.7 115 52.2
MBI10_g06044_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 2.2e-18 95.9 112 50.9
VMungo1383G2852 Vigna mungo HOM05D004974 ORTHO05D001537 2.9e-18 95.5 115 52.2
MBI10_g47169_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 4.9e-18 94.7 115 49.6
Prupe.8G203700 Prunus persica HOM05D004974 ORTHO05D001537 4.9e-18 94.7 109 52.3
MBI16_g31263_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 1.1e-17 93.6 136 44.9
EL10Ac7g17825 Beta vulgaris HOM05D004974 ORTHO05D001537 1.4e-17 93.2 113 53.1
Cc01_g17120 Coffea canephora HOM05D004974 ORTHO05D001537 1.9e-17 92.8 116 48.3
HPP92_000858 Vanilla planifolia HOM05D004974 ORTHO05D001537 1.9e-17 92.8 115 51.3
Lj5g0019880 Lotus japonicus HOM05D004974 ORTHO05D001537 5.4e-17 91.3 115 50.4
PGSC0003DMG400017652 Solanum tuberosum HOM05D004974 ORTHO05D001537 9.3e-17 90.5 146 42.5
Oeu004060.1 Olea europaea HOM05D004974 ORTHO05D001537 1.2e-16 90.1 158 39.9
Phvul.008G125000 Phaseolus vulgaris HOM05D004974 ORTHO05D001537 1.6e-16 89.7 115 50.4
BcaC05g29837 Brassica carinata HOM05D004974 ORTHO05D001537 2.7e-16 89.0 92 60.9
BcaC09g47938 Brassica carinata HOM05D004974 ORTHO05D001537 2.7e-16 89.0 103 54.4
Haze_24788 Corylus avellana HOM05D004974 ORTHO05D001537 6.0e-16 87.8 134 44.0
PSO170G3054 Papaver somniferum HOM05D004974 ORTHO05D001537 8.7e-15 84.0 114 46.5
HPP92_026551 Vanilla planifolia HOM05D004974 ORTHO05D001537 1.1e-14 83.6 136 43.4
PSO407G0193 Papaver somniferum HOM05D004974 ORTHO05D001537 1.5e-14 83.2 114 45.6
Mapoly0028s0131 Marchantia polymorpha HOM05D004974 ORTHO05D001537 9.6e-14 80.5 115 44.3
Lj1A85T20 Lonicera japonica HOM05D004974 ORTHO05D001537 1.6e-13 79.7 92 53.3
CiPaw.03G150400 Carya illinoinensis HOM05D004974 ORTHO05D001537 2.1e-13 79.3 72 61.1
QL09p054677 Quercus lobata HOM05D004974 ORTHO05D001537 4.8e-13 78.2 51 78.4
SMO167G0060 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 4.8e-13 78.2 136 37.5
SMO347G0321 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 4.8e-13 78.2 136 37.5
C07p12710 Brassica napus HOM05D004974 ORTHO05D001537 1.4e-12 76.6 86 53.5
Pp3c2_11660 Physcomitrium patens HOM05D004974 ORTHO05D001537 2.0e-11 72.8 111 43.2
BcaC06g35634 Brassica carinata HOM05D004974 ORTHO05D001537 2.6e-11 72.4 65 63.1
VMungo0720G1354 Vigna mungo HOM05D004974 ORTHO05D001537 3.8e-10 68.6 109 45.0
PRCOL_00001439 Prasinoderma coloniale HOM05D004974 ORTHO05D001537 7.1e-09 64.3 110 39.1
SEGI_24745 Sequoiadendron giganteum HOM05D004974 ORTHO05D001537 1.6e-08 63.2 53 58.5
QL09p054672 Quercus lobata HOM05D004974 ORTHO05D001537 6.7e-07 57.8 31 90.3
Actinidia23725 Actinidia chinensis HOM05D004974 ORTHO05D001537 4.3e-06 55.1 42 69.0
MCO05G003 Micromonas commoda HOM05D004974 ORTHO05D001537 5.6e-06 54.7 109 35.8
SEGI_31222 Sequoiadendron giganteum HOM05D004974 ORTHO05D001537 7.4e-06 54.3 31 87.1


User provided reference genes

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