Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1326.2 668 100.0
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 0.0e+00 1250.3 690 92.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1227.6 668 91.8
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 0.0e+00 1214.5 683 89.8
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 0.0e+00 1162.1 669 87.7
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 0.0e+00 1124.8 683 83.3
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 0.0e+00 1095.1 682 81.7
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 4.0e-306 1054.3 679 78.5
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 8.8e-306 1053.1 679 78.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 1.7e-296 1022.3 684 75.6
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 4.9e-280 967.6 681 72.7
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 4.6e-246 854.7 689 62.6
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.4e-231 806.6 488 82.2
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 7.7e-209 731.1 681 56.1
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.0e-205 720.7 681 55.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.7e-203 713.4 686 53.2
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.7e-203 713.4 677 52.7
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 4.1e-202 708.8 689 52.4
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.7e-198 695.3 694 51.3
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.4e-197 693.7 696 52.0
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 3.9e-197 692.2 668 51.9
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 5.7e-196 688.3 655 54.2
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.8e-195 686.0 690 50.7
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 7.7e-193 677.9 697 51.1
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 1.3e-192 677.2 694 51.4
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.5e-191 671.8 709 50.8
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.6e-190 670.2 686 51.3
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.2e-189 665.2 709 50.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 3.7e-187 659.1 692 50.0
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.2e-184 649.8 741 47.9
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 8.5e-184 647.9 668 48.4
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.2e-182 644.0 676 48.8
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.0e-181 641.0 692 48.6
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 4.0e-181 639.0 684 50.0
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 3.4e-180 636.0 693 46.9
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 5.7e-180 635.2 675 48.7
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.7e-179 633.6 677 47.9
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 6.3e-179 631.7 683 48.0
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.1e-178 630.9 685 48.5
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 1.8e-178 630.2 672 46.9
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.1e-178 629.0 695 48.3
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 9.1e-178 627.9 692 47.8
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 3.5e-177 625.9 670 49.6
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 4.5e-177 625.5 670 49.7
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 7.7e-177 624.8 697 46.6
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 7.7e-177 624.8 671 48.4
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.9e-176 622.9 646 48.0
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 2.5e-175 619.8 678 47.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 7.2e-175 618.2 683 46.7
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 2.8e-174 616.3 679 48.0
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 4.7e-174 615.5 676 49.9
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 6.8e-173 611.7 689 47.0
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 2.6e-172 609.8 681 47.1
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 9.8e-172 607.8 682 46.8
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.3e-171 607.4 389 78.7
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.4e-170 604.0 684 45.2
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.4e-170 603.2 692 45.7
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.1e-170 602.4 664 47.7
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 2.3e-168 596.7 591 54.0
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 3.8e-168 595.9 678 47.5
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 4.3e-167 592.4 610 49.7
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.6e-166 590.5 674 47.5
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.5e-164 583.9 684 45.8
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.5e-164 583.9 692 45.5
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 7.5e-164 581.6 677 47.3
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 8.3e-163 578.2 681 47.1
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.9e-162 577.0 682 46.8
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 6.0e-161 572.0 684 43.6
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.5e-159 567.4 690 45.2
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 9.5e-159 564.7 683 46.0
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.4e-156 555.8 668 45.8
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.6e-150 537.3 485 53.4
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.1e-149 533.1 717 42.1
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 5.2e-149 532.3 686 43.7
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.4e-146 523.5 492 51.8
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 3.2e-146 523.1 577 46.6
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.6e-142 510.8 537 51.6
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 4.0e-141 506.1 673 42.3
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 7.1e-138 495.4 428 58.4
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 9.2e-138 495.0 418 59.6
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 2.7e-137 493.4 435 54.9
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 6.2e-134 482.3 393 59.3
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 6.4e-131 472.2 604 45.5
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.0e-124 450.7 553 41.6
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 4.6e-121 439.5 476 49.6
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 4.0e-117 426.4 639 39.6
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.9e-115 419.5 438 52.7
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.9e-114 417.5 593 41.1
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 3.2e-114 416.8 427 51.5
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 4.2e-114 416.4 492 47.0
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.9e-111 407.5 545 41.7
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 7.1e-106 389.0 533 40.7
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 2.4e-101 374.0 499 39.5
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 3.9e-96 356.7 658 34.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 1.3e-94 351.7 700 32.4
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.7e-86 324.7 770 30.0
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 3.7e-86 323.6 708 31.6
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.7e-83 314.7 700 31.9
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.5e-82 311.6 703 31.6
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.4e-77 294.3 225 61.8
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.6e-73 281.6 688 31.2
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 3.0e-72 277.3 587 32.2
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.6e-71 274.2 421 37.3
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 2.7e-52 211.1 189 55.0
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.9e-46 191.0 168 54.8
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 6.6e-43 179.9 159 49.7
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 4.7e-41 173.7 322 33.9
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.5e-39 168.7 221 42.1
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 4.6e-36 157.1 306 34.3
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.5e-34 152.1 131 52.7
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 3.9e-27 127.5 148 43.2
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 4.3e-26 124.0 192 41.7
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 6.2e-25 120.2 89 59.6
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.8e-24 118.6 194 37.1
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.0e-23 115.2 131 45.8
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 1.3e-22 112.5 178 36.0
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 6.0e-20 103.6 247 27.5
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 2.0e-15 88.6 90 47.8
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 5.8e-15 87.0 132 37.9
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.0e-12 77.0 59 54.2


User provided reference genes

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