Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.4e-138 496.5 288 100.0
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 4.1e-135 485.0 283 100.0
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.3e-107 393.7 307 76.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.0e-105 386.3 307 81.1
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.9e-103 379.8 303 79.5
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 9.3e-103 377.5 300 79.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 6.0e-102 374.8 315 75.2
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 6.0e-102 374.8 299 81.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.0e-101 374.0 306 76.5
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 5.1e-101 371.7 300 78.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.5e-100 370.2 312 75.0
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 2.1e-99 366.3 304 79.6
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 4.8e-99 365.2 304 78.6
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.6e-97 359.4 305 78.4
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.5e-94 349.0 300 74.3
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 4.8e-91 338.6 281 80.4
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.8e-90 336.7 285 73.3
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.5e-81 305.4 292 68.8
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.8e-80 302.4 291 68.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 4.6e-78 295.4 298 65.4
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.1e-78 295.0 301 64.8
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.3e-76 289.3 300 66.0
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.3e-75 287.3 304 57.6
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 4.8e-75 285.4 285 68.4
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.3e-75 285.0 304 57.2
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.4e-74 283.9 304 57.2
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.1e-74 282.3 307 60.3
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 9.0e-74 281.2 293 64.8
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.3e-72 277.3 298 63.4
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.7e-72 276.9 290 66.9
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 8.5e-72 274.6 288 61.8
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 3.2e-71 272.7 298 57.7
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.5e-71 271.9 307 58.6
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 9.4e-71 271.2 301 60.5
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 9.4e-71 271.2 285 65.3
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 9.4e-71 271.2 283 60.8
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.1e-70 270.0 298 59.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 2.7e-70 269.6 302 61.3
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.6e-70 269.2 309 60.5
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 3.6e-70 269.2 286 60.8
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 7.9e-70 268.1 289 63.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.8e-69 266.9 299 59.2
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.8e-69 266.9 299 59.2
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.3e-69 266.5 287 62.4
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 3.9e-69 265.8 296 60.5
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 8.8e-69 264.6 297 62.3
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.1e-68 264.2 290 66.2
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.5e-68 263.8 293 61.1
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.0e-68 263.5 306 61.4
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.4e-68 262.3 287 61.0
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 5.7e-68 261.9 312 57.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.3e-67 260.8 305 60.7
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.8e-67 258.8 294 60.9
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 6.3e-67 258.5 291 59.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.3e-67 258.5 312 59.9
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.2e-67 258.1 295 58.0
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.1e-66 257.7 299 58.5
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-66 257.7 312 59.9
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-66 257.3 295 62.7
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.4e-66 257.3 302 58.9
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 5.3e-66 255.4 297 60.6
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 5.3e-66 255.4 285 59.6
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 5.3e-66 255.4 307 58.3
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 9.1e-66 254.6 296 57.8
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.2e-65 254.2 290 64.5
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.5e-65 253.8 294 63.6
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.0e-65 253.4 294 63.6
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.6e-65 253.1 305 62.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.4e-65 252.7 312 57.7
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.4e-65 252.7 292 58.9
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 4.5e-65 252.3 290 59.7
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 4.5e-65 252.3 295 63.4
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 4.5e-65 252.3 283 58.0
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.3e-64 250.8 290 64.1
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.2e-64 250.0 293 62.1
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.8e-64 249.2 303 59.1
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 3.8e-64 249.2 286 60.8
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.1e-63 247.7 304 58.9
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.9e-63 246.9 292 60.3
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 3.2e-63 246.1 249 67.1
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 4.2e-63 245.7 307 59.9
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.2e-63 245.7 279 62.0
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 9.4e-63 244.6 298 60.4
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 9.4e-63 244.6 283 61.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 9.4e-63 244.6 283 61.5
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.7e-62 243.0 300 56.7
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.6e-62 242.7 299 56.9
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.6e-62 242.7 281 59.4
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 7.9e-62 241.5 286 60.8
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.0e-61 241.1 306 56.9
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.8e-61 240.4 283 59.7
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.8e-61 240.4 294 58.8
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 5.2e-61 238.8 308 56.2
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 5.2e-61 238.8 296 56.8
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 6.7e-61 238.4 314 51.9
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 6.7e-61 238.4 292 52.4
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 6.7e-61 238.4 285 57.9
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 6.7e-61 238.4 285 57.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.5e-60 237.3 292 55.8
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.6e-60 236.5 303 60.7
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 4.4e-60 235.7 306 55.9
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 7.4e-60 235.0 283 63.3
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.3e-59 234.2 283 55.5
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.3e-59 234.2 308 58.8
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 3.7e-59 232.6 315 57.8
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.7e-59 232.6 300 58.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.3e-59 231.9 285 61.1
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.4e-58 230.7 292 52.7
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.8e-58 230.3 134 84.3
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.8e-58 230.3 320 55.6
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.1e-58 229.6 299 57.9
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.3e-58 228.8 342 54.1
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.3e-58 228.8 301 53.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 7.0e-58 228.4 320 55.6
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 9.1e-58 228.0 292 57.2
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.2e-57 227.6 305 57.4
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.6e-57 227.3 296 59.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.5e-57 226.1 305 59.7
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.0e-56 224.6 300 52.7
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 2.2e-56 223.4 297 56.6
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 8.5e-56 221.5 314 58.3
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 5.5e-55 218.8 289 52.2
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 7.2e-55 218.4 298 57.0
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 9.4e-55 218.0 286 55.9
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.7e-54 216.5 304 54.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.0e-53 212.6 292 57.5
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 5.2e-53 212.2 294 59.2
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.3e-52 209.5 300 53.7
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-51 206.8 259 58.3
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.8e-50 203.8 292 55.1
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.0e-49 200.3 287 52.6
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.7e-48 197.2 294 49.0
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.0e-48 195.7 212 64.2
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 6.5e-48 195.3 302 55.0
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 8.5e-48 194.9 292 50.7
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.9e-47 193.7 420 39.3
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.2e-47 193.0 214 68.2
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.7e-46 189.1 287 46.3
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.0e-45 186.4 283 54.1
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 6.8e-45 185.3 278 52.9
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 4.8e-43 179.1 221 57.5
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 6.3e-43 178.7 203 62.6
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.2e-41 174.5 207 63.3
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 5.9e-41 172.2 131 68.7
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.2e-40 170.2 314 39.8
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.9e-39 167.2 287 51.2
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.2e-39 166.4 308 43.5
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.1e-38 163.7 271 49.1
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.4e-37 161.0 280 51.1
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.8e-37 160.6 207 64.3
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 6.8e-37 158.7 103 74.8
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.6e-36 156.8 225 61.3
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.8e-32 142.9 74 91.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 5.6e-31 139.0 297 40.7
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 2.1e-30 137.1 324 40.4
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 5.2e-29 132.5 319 42.6
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 5.4e-26 122.5 103 60.2
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 2.0e-25 120.6 316 40.5
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 2.3e-24 117.1 336 42.9
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.6e-24 115.5 216 50.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.5e-23 114.4 190 50.0
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 6.2e-22 109.0 115 57.4
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.4e-20 102.8 101 60.4
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.0e-17 94.0 84 59.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 3.0e-16 90.1 62 64.5
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 8.6e-16 88.6 84 58.3
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 3.6e-14 83.2 64 57.8
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.8e-13 80.9 111 51.4
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 7.5e-12 75.5 104 50.0
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.7e-11 74.3 213 37.6
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.2e-11 73.9 70 55.7
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.4e-11 72.4 66 56.1
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 3.2e-10 70.1 287 36.6
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 5.4e-10 69.3 88 48.9
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 2.5e-07 60.5 324 25.6
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 4.7e-06 56.2 261 41.8
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.7e-06 56.2 53 56.6
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 8.1e-06 55.5 78 47.4


User provided reference genes

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