Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 4.6e-280 967.2 483 100.0
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.0e-279 966.1 483 99.8
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.9e-258 894.8 489 93.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 9.3e-257 889.8 490 92.4
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 9.7e-254 879.8 491 91.0
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 8.2e-229 797.0 496 84.3
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.8e-228 795.8 498 83.9
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.2e-227 793.1 499 83.6
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.6e-227 792.7 506 82.8
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 5.9e-227 790.8 506 83.4
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.2e-222 776.5 507 81.3
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.3e-221 773.1 509 81.3
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 3.8e-218 761.5 512 79.5
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.9e-217 759.2 513 79.5
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 2.6e-214 748.8 506 78.5
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 4.7e-200 701.4 504 75.0
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.9e-193 679.5 505 71.7
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 4.0e-191 671.8 516 70.5
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.9e-191 670.6 506 71.3
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.5e-190 669.8 506 71.3
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.9e-189 664.8 508 71.1
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 6.4e-189 664.5 506 70.8
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.6e-187 659.8 505 69.7
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 5.6e-185 651.4 496 69.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 3.4e-182 642.1 505 68.9
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 5.8e-182 641.3 505 68.5
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.7e-181 638.6 507 67.7
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 5.4e-180 634.8 509 68.2
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 7.1e-180 634.4 509 67.0
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.0e-178 629.0 511 66.3
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 6.6e-178 627.9 496 68.8
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.1e-177 627.1 506 67.0
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.9e-177 626.3 505 67.1
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 2.5e-177 625.9 507 67.9
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.5e-177 625.9 502 68.3
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.5e-177 625.9 504 66.9
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.3e-177 625.2 507 67.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 4.3e-177 625.2 499 68.1
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 7.3e-177 624.4 509 68.0
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.4e-175 619.4 507 65.1
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.2e-174 617.1 499 67.3
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.1e-172 610.5 498 66.5
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.4e-172 608.2 515 64.1
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 7.1e-172 607.8 508 65.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.6e-171 606.7 497 65.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.6e-171 606.7 510 65.3
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.1e-171 606.3 502 66.5
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 2.1e-171 606.3 500 65.8
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.7e-171 605.9 502 66.5
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-171 605.5 501 67.1
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 4.6e-171 605.1 493 66.5
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 6.0e-171 604.7 507 65.1
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 7.8e-171 604.4 515 64.1
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-170 603.6 502 66.5
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.3e-170 603.6 496 65.1
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.0e-170 602.4 513 63.9
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 5.6e-169 598.2 500 65.4
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 9.6e-169 597.4 497 64.8
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.6e-168 596.7 509 64.0
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.7e-168 595.1 499 65.5
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 6.2e-168 594.7 498 65.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 1.1e-167 594.0 500 64.8
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.8e-167 593.2 496 65.3
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 4.0e-167 592.0 496 65.5
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 9.0e-167 590.9 502 65.3
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.8e-166 588.2 503 62.4
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 7.6e-166 587.8 496 64.5
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 7.1e-164 581.3 510 63.3
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.0e-162 577.4 501 64.1
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.9e-162 575.5 501 62.7
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 5.1e-162 575.1 503 63.6
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.1e-161 573.9 528 62.3
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.9e-161 573.2 504 63.7
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.9e-161 573.2 500 63.2
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 2.5e-161 572.8 507 62.9
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 5.6e-161 571.6 508 64.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.3e-160 570.5 507 62.5
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.3e-160 570.5 507 62.3
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.4e-159 567.0 509 60.9
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.1e-159 565.8 510 62.4
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 4.0e-159 565.5 513 62.0
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 6.9e-159 564.7 516 62.4
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.4e-158 562.4 493 64.3
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 6.4e-157 558.1 500 61.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.4e-156 556.2 515 60.2
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.6e-155 553.5 513 60.8
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.6e-155 553.5 504 62.3
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 2.7e-155 552.7 506 63.0
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 2.7e-155 552.7 512 61.9
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 6.0e-155 551.6 498 62.9
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 6.0e-155 551.6 513 59.8
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 7.9e-155 551.2 502 60.4
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.0e-154 550.8 458 64.2
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 4.3e-153 545.4 519 60.5
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 3.7e-152 542.3 502 60.2
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 6.4e-149 531.6 464 62.3
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.9e-148 530.0 506 60.1
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 5.5e-148 528.5 489 60.1
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.5e-145 519.6 476 59.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.0e-141 507.7 513 55.4
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.9e-141 505.4 513 55.8
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.6e-139 498.8 513 55.4
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.3e-133 480.7 510 55.9
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 6.5e-133 478.4 499 57.3
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 8.5e-133 478.0 501 56.5
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 8.5e-133 478.0 500 56.8
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 6.7e-130 468.4 441 59.2
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 6.7e-130 468.4 493 56.0
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 4.5e-126 455.7 478 56.3
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.0e-122 443.0 530 51.1
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 7.7e-118 428.3 484 52.9
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 1.0e-114 417.9 529 49.9
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 5.2e-114 415.6 488 52.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.8e-112 409.8 510 49.6
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 7.7e-102 375.2 301 64.5
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 8.5e-101 371.7 490 47.6
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 2.9e-93 346.7 291 64.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 5.2e-90 335.9 560 41.2
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.3e-84 316.6 488 45.3
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 6.8e-58 229.2 282 48.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.1e-52 211.8 329 41.6
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.9e-48 197.2 204 57.8
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.2e-39 167.2 266 40.2
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.6e-27 128.3 97 69.1
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.4e-26 125.2 487 27.1
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 6.5e-24 116.3 531 26.0
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-21 108.6 81 63.0
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-19 101.7 70 74.3
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 2.7e-14 84.3 74 54.1
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.9e-14 82.8 56 67.9
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.2e-11 74.7 165 32.1
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.1e-10 70.9 63 52.4


User provided reference genes

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