Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.2e-236 822.0 439 100.0
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.7e-234 815.1 439 99.3
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 9.4e-232 806.6 439 98.2
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 2.1e-231 805.4 439 97.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.8e-222 775.8 439 95.4
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 6.6e-217 757.3 439 90.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.6e-217 757.3 438 92.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 4.7e-215 751.1 439 90.7
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 4.0e-214 748.0 439 89.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 7.5e-213 743.8 439 90.0
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.1e-200 703.4 438 86.1
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 8.6e-193 677.2 434 82.0
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.4e-179 633.3 418 76.8
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 4.2e-163 578.6 436 72.0
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 9.6e-160 567.4 432 69.9
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.6e-159 566.6 432 69.7
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 8.2e-159 564.3 432 68.5
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.1e-158 563.9 437 69.1
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 6.9e-158 561.2 437 68.6
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 9.0e-158 560.8 440 69.3
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.5e-157 560.1 437 67.5
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 3.4e-157 558.9 437 67.5
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.3e-156 557.0 454 66.5
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.9e-156 555.8 437 67.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.8e-156 555.4 437 68.0
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.9e-155 553.1 430 68.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.5e-155 552.7 430 67.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 5.5e-155 551.6 425 69.2
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 7.1e-155 551.2 433 68.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 9.3e-155 550.8 438 68.5
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 9.3e-155 550.8 433 69.3
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 3.5e-154 548.9 440 67.0
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 6.1e-154 548.1 431 68.2
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.0e-153 547.4 433 69.1
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-153 547.0 438 68.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.8e-153 546.6 438 68.9
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.9e-153 545.4 439 67.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.1e-152 543.9 437 67.0
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-152 543.9 434 68.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 4.3e-152 542.0 437 67.3
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.8e-151 538.5 414 68.8
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 8.2e-151 537.7 435 67.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.8e-150 536.6 432 67.8
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 4.5e-149 531.9 432 66.9
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.3e-148 530.4 444 64.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-148 529.6 434 66.4
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.4e-147 526.9 434 66.6
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.5e-147 526.2 430 66.7
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.2e-147 525.8 414 66.2
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.2e-147 525.8 434 67.1
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.6e-146 523.5 434 63.8
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.7e-146 522.7 434 65.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 6.1e-146 521.5 435 65.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 6.1e-146 521.5 432 66.0
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.0e-145 520.8 432 65.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.4e-145 520.4 431 65.4
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.4e-145 520.4 432 65.7
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 5.1e-145 518.5 412 67.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.8e-145 517.7 433 64.0
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.8e-145 517.7 433 64.0
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.5e-144 516.9 433 64.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.3e-144 515.8 430 65.6
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.3e-144 515.4 432 65.0
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.4e-144 514.6 427 64.4
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 7.4e-144 514.6 438 63.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 7.4e-144 514.6 417 66.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.3e-143 513.8 431 62.6
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.8e-143 512.7 439 63.6
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 8.2e-143 511.1 439 64.2
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.8e-142 510.0 433 64.9
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.4e-142 509.6 432 64.6
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 5.3e-142 508.4 438 63.5
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.2e-141 507.3 429 62.7
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.3e-140 503.8 432 63.9
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-140 503.8 513 56.5
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.9e-140 502.7 431 63.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 5.0e-140 501.9 411 66.2
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 8.5e-140 501.1 428 63.1
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 8.5e-140 501.1 428 62.4
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.2e-139 499.2 429 62.2
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 4.2e-139 498.8 433 63.0
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 9.4e-139 497.7 429 62.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-138 497.3 430 63.3
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-138 497.3 430 63.3
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.6e-138 496.9 429 62.0
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 3.6e-138 495.7 428 63.3
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.4e-137 493.8 431 62.4
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.0e-137 492.7 427 61.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.6e-136 489.6 439 62.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.7e-136 487.6 411 64.2
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-135 487.3 448 61.2
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.7e-135 486.9 375 69.3
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.8e-135 486.1 417 63.5
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.4e-134 483.8 436 59.4
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.4e-134 483.8 434 62.2
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 3.1e-134 482.6 433 59.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.7e-132 476.9 427 61.6
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 2.2e-132 476.5 434 60.8
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.0e-132 475.3 439 60.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 6.5e-132 474.9 474 56.8
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.5e-131 473.8 413 61.7
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.5e-131 473.0 369 65.0
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 4.2e-131 472.2 441 59.4
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 7.2e-131 471.5 437 61.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.2e-130 470.7 427 63.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.6e-130 470.3 439 59.9
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 3.0e-129 466.1 436 60.3
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.5e-128 463.8 434 58.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.0e-128 463.4 420 62.9
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 3.2e-123 446.0 430 55.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.2e-123 445.7 441 57.8
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.8e-121 440.3 417 58.5
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.6e-120 436.4 429 56.9
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 2.8e-119 433.0 433 55.2
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 8.3e-119 431.4 373 63.3
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.0e-117 426.8 429 56.2
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.6e-114 416.0 439 55.1
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.7e-111 407.1 256 88.3
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-111 406.8 432 56.0
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.0e-110 401.7 432 53.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.6e-109 400.6 516 48.1
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 8.9e-105 384.8 314 65.6
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 4.1e-102 375.9 345 60.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.8e-97 360.5 304 64.5
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.3e-97 360.1 432 50.9
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.2e-96 357.8 298 62.8
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.2e-96 357.8 379 57.5
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 7.5e-96 355.1 430 49.8
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.0e-89 332.8 184 90.2
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.4e-86 323.6 413 44.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 9.2e-86 321.6 413 45.8
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.4e-81 307.8 301 55.1
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.6e-67 259.2 415 42.7
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-65 255.0 201 68.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.3e-65 252.7 323 48.0
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.2e-64 251.5 180 71.1
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.4e-55 219.2 190 62.6
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.5e-51 208.0 198 56.1
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 5.6e-51 206.1 115 93.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-48 197.6 160 68.8
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.7e-45 187.2 176 55.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.3e-41 172.9 147 67.3
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 5.5e-38 162.9 139 54.7
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 4.6e-37 159.8 243 43.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 5.1e-36 156.4 120 70.8
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 3.7e-26 123.6 89 67.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.2e-23 114.4 80 73.8
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.4e-19 99.4 104 56.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.7e-19 99.0 112 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.9e-14 84.7 127 43.3
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.2e-13 82.0 332 26.8
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 5.2e-12 76.6 458 24.5
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 7.5e-11 72.8 412 24.5
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.8e-10 70.1 44 77.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.2e-08 65.5 215 25.6
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 7.7e-08 62.8 51 64.7
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 9.4e-06 55.8 203 26.1


User provided reference genes

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