Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 5.6e-75 284.6 196 100.0
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 5.6e-75 284.6 196 100.0
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-66 256.9 196 91.3
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-66 256.9 196 91.3
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.2e-66 256.9 196 91.3
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.2e-66 256.9 196 91.3
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 4.6e-37 158.7 202 66.3
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.3e-36 157.1 207 55.6
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.8e-36 156.8 210 62.4
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 5.1e-36 155.2 203 49.3
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 8.7e-36 154.5 188 68.6
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 2.5e-35 152.9 206 47.6
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.5e-35 152.9 203 46.3
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 2.5e-35 152.9 206 47.6
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.5e-35 152.9 204 63.2
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 3.3e-35 152.5 209 63.6
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 9.6e-35 151.0 203 45.8
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-34 150.2 202 64.9
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-34 150.2 205 53.2
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-34 150.2 205 53.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 2.8e-34 149.4 205 52.7
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.1e-33 147.5 205 52.7
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.4e-33 146.4 187 46.0
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.9e-31 139.4 207 62.3
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.9e-28 129.0 202 59.9
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.4e-25 120.6 178 63.5
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 3.1e-25 119.4 182 51.6
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 6.9e-25 118.2 180 60.0
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 2.6e-24 116.3 195 57.4
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 4.5e-24 115.5 203 58.1
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.7e-23 113.6 161 62.1
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.7e-23 113.6 161 62.1
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.1e-22 110.9 161 65.8
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.5e-22 109.8 182 57.7
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 3.2e-22 109.4 199 52.8
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 4.2e-22 109.0 198 55.1
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 4.2e-22 109.0 196 56.1
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.2e-22 109.0 184 58.2
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 5.5e-22 108.6 198 53.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 9.3e-22 107.8 161 52.2
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 9.3e-22 107.8 199 44.7
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.2e-21 107.5 199 50.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.2e-21 107.5 168 61.9
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.2e-21 107.5 163 64.4
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-21 107.1 180 58.9
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.1e-21 106.7 200 57.5
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 2.1e-21 106.7 163 63.2
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.1e-21 106.7 198 53.0
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.7e-21 106.3 180 58.3
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.5e-21 105.9 197 55.8
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.5e-21 105.9 197 55.8
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 3.5e-21 105.9 146 71.9
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 3.5e-21 105.9 180 57.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 3.5e-21 105.9 195 55.9
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 4.6e-21 105.5 163 62.6
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.6e-21 105.5 163 62.6
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 6.0e-21 105.1 161 63.4
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 7.9e-21 104.8 182 57.7
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.0e-20 104.4 157 65.6
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 1.8e-20 103.6 161 65.8
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.8e-20 103.6 163 62.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.8e-20 103.6 163 62.6
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.8e-20 103.6 178 57.3
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.8e-20 103.6 199 56.3
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 2.3e-20 103.2 204 52.9
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.3e-20 103.2 199 56.8
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 3.0e-20 102.8 197 54.3
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.9e-20 102.4 170 55.3
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 3.9e-20 102.4 197 54.8
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.9e-20 102.4 163 62.0
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 5.1e-20 102.1 197 55.3
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 5.1e-20 102.1 200 54.0
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 8.7e-20 101.3 199 52.8
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 8.7e-20 101.3 196 55.6
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 8.7e-20 101.3 196 56.6
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.5e-19 100.5 195 53.8
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.5e-19 100.5 194 55.7
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.5e-19 100.5 162 56.2
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 3.3e-19 99.4 198 56.6
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 3.3e-19 99.4 224 48.7
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 3.3e-19 99.4 161 65.2
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 4.3e-19 99.0 199 51.8
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 4.3e-19 99.0 198 55.6
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 5.7e-19 98.6 195 56.4
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.7e-19 98.6 162 63.0
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.7e-19 98.6 194 55.2
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 9.7e-19 97.8 162 61.1
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.3e-18 97.4 198 55.1
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.3e-18 97.4 199 53.8
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.3e-18 97.4 162 58.6
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.2e-18 96.7 193 54.4
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.2e-18 96.7 193 54.4
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.8e-18 96.3 162 61.1
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.8e-18 96.3 162 60.5
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.8e-18 96.3 166 63.3
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 3.7e-18 95.9 197 53.8
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 4.8e-18 95.5 196 54.6
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 8.2e-18 94.7 168 58.9
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 8.2e-18 94.7 198 54.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 8.2e-18 94.7 161 60.9
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 8.2e-18 94.7 200 55.0
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 8.2e-18 94.7 182 54.4
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.1e-17 94.4 170 58.8
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.4e-17 94.0 162 61.1
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 2.4e-17 93.2 104 61.5
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.4e-17 93.2 197 55.3
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 4.1e-17 92.4 161 60.2
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 4.1e-17 92.4 166 60.8
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.3e-17 92.0 163 60.1
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 5.3e-17 92.0 143 46.2
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 6.9e-17 91.7 167 59.3
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 9.0e-17 91.3 147 62.6
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 9.0e-17 91.3 167 47.9
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.2e-16 90.9 184 47.8
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 4.5e-16 89.0 190 44.7
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 4.5e-16 89.0 217 50.2
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 4.5e-16 89.0 170 57.6
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.2e-15 86.7 101 62.4
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 2.2e-15 86.7 200 50.5
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.9e-15 86.3 171 56.7
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 2.9e-15 86.3 140 50.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 6.5e-15 85.1 206 51.0
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.1e-14 84.3 165 56.4
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.5e-14 83.2 204 38.7
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 4.2e-14 82.4 145 60.7
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.6e-13 79.3 216 40.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 3.6e-13 79.3 166 56.0
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 5.1e-12 75.5 138 59.4
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.0e-11 73.6 105 54.3
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 9.7e-11 71.2 201 40.8
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 9.7e-11 71.2 102 45.1
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 3.7e-10 69.3 138 43.5
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-09 67.8 152 55.3
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.8e-09 67.0 160 43.8
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.4e-09 66.6 150 56.0
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.5e-08 63.9 172 50.0
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.0e-08 63.5 86 55.8
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.4e-08 62.8 143 37.8
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 7.7e-08 61.6 43 60.5
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 5.0e-07 58.9 151 55.6
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 4.2e-06 55.8 70 42.9


User provided reference genes

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