Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 2022.7 1057 100.0
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1993.8 1072 96.6
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1991.1 1072 96.5
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1939.5 1057 94.7
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1907.9 1057 95.4
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1892.9 1057 93.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1887.1 1058 93.0
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1877.1 1057 92.6
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1872.1 1092 89.4
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1870.9 1058 92.2
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1869.7 1092 89.4
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1865.5 1058 92.2
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1853.6 1063 91.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1844.7 1045 91.8
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1840.1 1077 89.0
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1816.6 1077 88.1
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1801.9 1051 89.2
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1793.1 1077 87.3
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1767.3 1077 86.3
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1734.2 1058 84.1
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1697.2 1063 84.6
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1521.5 1087 73.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1519.2 1070 74.4
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1518.1 1069 74.0
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1509.6 1071 73.9
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1509.2 1078 72.7
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1507.3 1077 73.0
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1504.2 1071 73.0
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1502.6 1078 73.2
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1500.7 1071 72.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1496.5 1077 72.3
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1494.6 1082 71.9
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1488.4 1075 72.2
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1487.2 1072 72.8
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1484.5 1072 72.3
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1072 72.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1481.5 1072 72.0
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1479.9 1072 72.6
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1479.5 1078 71.5
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1479.2 1082 72.1
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1478.0 1080 71.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1474.9 1068 71.3
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1073 71.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1466.8 1069 71.9
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1463.7 1073 70.9
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1460.3 1072 71.7
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1458.0 1070 70.6
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1458.0 1067 72.0
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1456.8 1042 73.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1454.1 1078 71.3
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1453.7 1080 70.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1450.6 1073 70.4
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1450.3 1025 74.2
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1448.7 1072 70.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1447.6 1072 70.9
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1444.9 1081 69.6
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1444.5 1072 70.7
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1440.6 1065 71.3
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1438.3 1072 70.7
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1436.8 1066 70.6
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1069 70.4
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1066 70.5
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1432.5 1074 69.7
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1427.9 1078 69.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1427.5 1069 70.1
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1421.0 1074 69.4
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1412.5 1081 68.5
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1400.2 1147 66.1
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1397.9 1078 68.2
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1390.6 1065 69.9
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1387.5 1079 68.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1380.9 1079 67.2
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1372.8 1111 66.7
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1371.7 1094 66.7
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1366.7 1082 66.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1337.8 1070 66.2
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1325.1 1094 65.1
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1317.0 1068 65.4
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1312.4 1178 62.6
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1312.0 988 70.5
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1307.7 1069 65.0
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1299.3 1135 63.9
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1296.2 1070 64.7
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1286.9 1073 64.1
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1278.1 1078 64.0
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1276.5 1003 68.6
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1269.6 1069 64.7
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1269.2 1109 62.8
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1260.0 1153 61.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1259.6 947 69.7
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1247.6 1102 62.2
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1231.9 1072 60.3
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1229.5 1043 64.3
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1225.3 1100 60.3
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1220.3 1173 60.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1207.2 1069 59.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1203.7 1070 61.3
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1201.4 1070 59.5
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1189.1 1020 62.3
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1185.6 1060 61.6
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1175.6 1055 61.8
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1160.6 1056 61.3
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1104.4 1076 58.3
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1097.4 859 67.8
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1090.5 1257 51.9
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.8e-306 1054.7 544 100.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.8e-306 1054.7 739 74.0
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 3.2e-302 1042.0 908 61.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.7e-293 1011.5 905 62.0
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 4.0e-276 955.3 1082 49.3
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.0e-275 953.0 1097 48.1
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 5.0e-271 938.3 727 69.6
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.2e-269 933.7 970 56.2
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.2e-251 874.0 1088 46.0
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.4e-249 867.1 629 73.0
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.7e-248 862.8 827 58.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 8.3e-242 841.3 1048 45.9
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 9.9e-235 817.8 1084 43.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.6e-232 810.4 417 100.0
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.3e-213 747.7 776 57.2
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 6.9e-204 715.3 575 67.0
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.8e-202 709.5 553 67.8
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 3.5e-200 703.0 516 70.9
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 5.1e-191 672.5 550 65.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 3.1e-188 663.3 703 53.8
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 5.3e-180 636.0 1230 34.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.9e-175 619.8 811 45.4
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.3e-173 614.8 528 64.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.4e-166 589.7 832 45.7
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 5.9e-155 552.7 387 73.6
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.9e-141 506.5 373 71.3
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-125 455.3 346 68.5
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.4e-116 424.5 388 59.0
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 7.1e-116 422.9 320 71.9
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 1.6e-115 421.8 359 64.1
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.3e-114 417.9 333 67.9
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.9e-108 398.3 366 60.9
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.2e-99 369.0 275 69.1
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.5e-97 362.1 308 65.6
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.5e-89 335.5 365 51.2
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 4.8e-88 330.5 178 92.7
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.8e-80 304.7 228 68.0
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.8e-63 248.8 175 71.4
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.0e-57 228.8 143 76.2
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.3e-55 220.7 162 64.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 6.1e-51 207.2 139 71.9
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.3e-50 205.3 129 79.8
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.8e-47 195.7 139 68.3
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 5.3e-47 194.1 103 92.2
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.9e-46 190.7 108 86.1
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.5e-38 164.9 114 71.1
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 7.5e-33 147.1 85 81.2
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.8e-32 145.2 176 49.4
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 2.4e-31 142.1 111 64.9
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.0e-30 139.0 87 72.4
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 2.0e-30 139.0 86 72.1
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.3e-28 131.7 84 76.2
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 6.1e-27 127.5 203 33.5
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 6.8e-26 124.0 168 47.0
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-25 122.1 92 66.3
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 9.8e-25 120.2 98 65.3
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-24 119.8 79 65.8
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 3.7e-24 118.2 79 68.4
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.9e-24 117.9 111 59.5
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.1e-19 102.4 86 65.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.8e-18 99.4 81 59.3
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 3.4e-17 95.1 100 52.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 84 54.8
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 84 54.8
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.0e-14 84.3 61 65.6
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.0e-14 84.3 61 65.6
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 2.5e-12 79.0 53 79.2
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.3e-12 78.2 49 75.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.6e-11 75.1 71 54.9
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 6.8e-10 70.9 58 62.1
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 2.6e-09 68.9 48 70.8
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 3.7e-08 65.1 52 55.8


User provided reference genes

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