Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 0.0e+00 1110.1 578 100.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 0.0e+00 1110.1 578 100.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 2.5e-304 1048.1 585 94.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 2.5e-304 1048.1 585 94.5
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 7.1e-304 1046.6 585 94.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.6e-287 990.7 586 90.4
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.7e-260 901.4 598 79.4
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.5e-250 868.2 597 78.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.0e-245 852.4 602 75.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.2e-228 795.8 596 73.0
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 5.8e-205 718.0 631 62.8
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.3e-201 706.8 643 61.0
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.3e-201 706.1 629 61.7
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.8e-199 698.4 622 61.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.8e-199 698.4 637 60.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 4.8e-199 698.4 602 62.6
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.1e-198 697.2 610 59.7
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-198 696.4 600 63.0
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 9.9e-197 690.6 600 62.3
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 7.9e-194 681.0 638 59.2
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 2.0e-189 666.4 601 60.9
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.0e-189 666.4 588 60.7
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 4.6e-178 628.6 572 60.5
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.3e-177 627.1 450 75.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.3e-172 610.5 633 52.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 6.5e-172 608.2 633 51.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.6e-170 603.6 626 52.1
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.6e-170 602.1 621 51.4
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.9e-169 599.0 633 52.4
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 5.1e-169 598.6 628 52.7
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.6e-168 596.3 610 53.0
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.8e-167 592.8 620 53.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 4.1e-166 589.0 624 52.1
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.2e-165 587.4 630 50.5
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.2e-165 587.4 621 51.4
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.0e-165 586.6 633 50.9
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.0e-165 586.6 626 50.5
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.6e-165 586.3 625 51.4
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 4.5e-165 585.5 633 50.9
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.0e-164 582.0 633 51.8
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 5.0e-164 582.0 643 50.7
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 8.5e-164 581.3 623 52.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.9e-163 580.1 615 50.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 7.2e-163 578.2 629 50.4
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 7.2e-163 578.2 631 50.1
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.6e-162 577.0 597 51.8
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.0e-161 574.3 592 52.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.0e-161 574.3 633 50.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.4e-161 573.9 629 51.0
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.8e-161 573.5 625 49.8
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 5.2e-161 572.0 627 50.2
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 5.2e-161 572.0 625 49.3
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 6.7e-161 571.6 630 49.4
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 6.7e-161 571.6 614 51.3
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 8.8e-161 571.2 615 49.9
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.1e-160 570.9 634 49.2
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.5e-160 570.5 573 52.4
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.2e-159 566.6 575 52.9
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 2.2e-159 566.6 629 52.8
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.2e-159 566.6 631 49.8
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.1e-158 564.3 628 48.4
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.4e-158 563.9 633 48.7
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.8e-158 563.5 627 49.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.4e-158 563.1 636 50.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 3.1e-158 562.8 639 49.0
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 5.3e-158 562.0 638 49.7
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 5.3e-158 562.0 618 50.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.2e-157 560.8 586 51.9
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.6e-157 560.5 622 48.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.6e-157 559.7 668 47.5
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.2e-156 556.6 630 48.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.9e-156 556.2 645 49.1
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 5.0e-156 555.4 629 49.0
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.1e-155 554.3 628 49.5
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.5e-155 553.9 575 52.0
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 3.2e-155 552.7 636 49.2
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 4.2e-155 552.4 605 49.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.7e-154 549.7 630 48.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.6e-154 549.3 515 55.7
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.6e-154 549.3 604 51.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 3.6e-154 549.3 625 49.3
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 4.7e-154 548.9 620 50.2
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.3e-153 546.6 647 49.1
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.3e-153 546.6 624 48.6
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 3.0e-153 546.2 607 52.2
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.6e-152 543.1 631 47.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.3e-152 542.7 609 48.3
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 7.5e-152 541.6 638 48.7
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.3e-151 540.8 616 50.8
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.8e-151 539.7 617 49.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.4e-150 536.6 616 49.2
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 2.4e-150 536.6 633 47.2
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.5e-148 528.1 608 48.5
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 1.5e-147 527.3 507 55.0
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.9e-147 526.9 644 46.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.1e-146 523.5 489 55.6
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 2.7e-146 523.1 496 55.0
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 3.6e-146 522.7 628 46.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 3.0e-145 519.6 636 47.0
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.6e-144 516.5 493 55.4
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 5.7e-144 515.4 515 53.4
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 9.8e-144 514.6 540 52.6
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.3e-143 514.2 629 45.9
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 6.3e-143 511.9 642 47.4
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.1e-142 511.1 504 53.4
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.2e-141 507.7 565 49.2
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.0e-140 504.6 505 52.1
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 8.6e-140 501.5 588 48.3
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.9e-139 500.4 479 54.3
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 2.5e-139 500.0 495 54.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 5.5e-139 498.8 485 53.6
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.6e-138 497.3 522 52.1
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 8.8e-137 491.5 683 44.2
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.2e-136 491.1 640 44.2
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.7e-136 488.8 519 50.1
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.4e-134 483.4 602 48.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.5e-131 474.2 564 47.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.0e-129 466.1 620 42.6
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 6.8e-129 465.3 650 43.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.2e-125 454.5 611 45.5
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.6e-125 452.6 485 49.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.9e-125 452.2 632 44.5
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.9e-119 433.3 521 47.2
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 3.7e-119 433.0 524 47.5
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 3.5e-117 426.4 460 50.9
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.1e-114 415.2 603 41.8
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-111 407.9 427 51.8
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 8.3e-111 405.2 386 58.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 7.1e-110 402.1 596 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 3.9e-108 396.4 608 39.5
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 4.7e-106 389.4 490 44.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-106 389.4 478 44.4
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-106 389.4 478 44.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 5.4e-102 375.9 480 46.5
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.6e-98 364.4 459 44.7
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 2.6e-88 330.5 599 37.9
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.4e-75 285.8 605 34.4
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 3.7e-74 283.5 502 37.3
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.4e-70 271.6 657 31.4
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 4.2e-54 216.9 409 32.5
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.9e-53 212.6 359 39.6
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.7e-50 204.9 286 43.0
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 3.0e-44 184.1 200 46.0
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.8e-34 150.2 127 58.3
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.9e-24 116.7 185 35.7
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 2.0e-19 101.7 59 74.6
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.4e-17 93.6 159 37.1
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-09 68.2 43 69.8
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 5.6e-06 57.0 56 53.6


User provided reference genes

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