Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 7.8e-77 290.4 150 100.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 7.8e-77 290.4 150 100.0
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.3e-65 252.3 153 85.6
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-64 249.6 149 85.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 6.4e-63 244.2 149 84.6
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 8.3e-63 243.8 153 83.7
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 7.1e-62 240.7 153 83.0
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-58 229.9 154 79.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.2e-58 229.9 154 79.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.2e-58 229.9 154 79.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.8e-58 228.8 154 77.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-56 223.4 147 81.6
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.4e-56 221.9 154 77.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 7.6e-56 220.7 154 76.6
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.6e-53 213.0 147 78.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.3e-51 205.3 146 76.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.2e-50 201.1 147 74.8
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 5.1e-44 181.4 119 75.6
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-43 179.9 128 69.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.5e-43 179.1 141 63.1
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.3e-43 178.7 128 71.1
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.3e-43 178.7 120 73.3
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 7.3e-43 177.6 128 71.1
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.6e-42 175.3 142 67.6
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 3.6e-42 175.3 123 69.1
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.6e-40 167.5 168 54.8
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.9e-39 164.9 128 64.1
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.9e-39 164.9 128 64.1
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 6.4e-39 164.5 128 64.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.4e-39 164.5 128 64.1
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-37 160.2 128 62.5
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-37 160.2 128 62.5
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.6e-37 159.8 128 58.6
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.1e-37 159.5 128 59.4
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.5e-37 158.7 128 60.2
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 3.5e-37 158.7 128 61.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.3e-36 156.8 118 65.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.3e-36 156.0 127 60.6
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.3e-36 156.0 127 62.2
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.3e-36 156.0 122 63.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 5.1e-36 154.8 125 60.0
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 8.7e-36 154.1 127 59.8
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 8.7e-36 154.1 130 60.0
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.5e-35 153.3 123 61.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.5e-35 153.3 126 61.1
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.9e-35 152.9 121 62.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.9e-35 152.9 132 59.1
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.5e-35 152.5 132 55.3
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.3e-35 152.1 126 59.5
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.3e-35 152.1 137 63.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.3e-35 152.1 123 60.2
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.6e-35 151.4 118 64.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 7.4e-35 151.0 125 60.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 9.6e-35 150.6 120 60.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 9.6e-35 150.6 125 59.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.3e-34 150.2 153 51.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-34 150.2 130 53.8
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-34 149.8 121 61.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.8e-34 149.1 126 58.7
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.8e-34 149.1 127 59.1
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.8e-34 149.1 121 60.3
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 3.7e-34 148.7 126 57.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 4.8e-34 148.3 145 52.4
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.8e-34 148.3 118 61.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.8e-34 148.3 118 61.9
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.8e-34 148.3 125 60.0
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 4.8e-34 148.3 121 62.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 6.2e-34 147.9 123 59.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 6.2e-34 147.9 121 61.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 8.1e-34 147.5 126 56.3
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 8.1e-34 147.5 130 59.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 8.1e-34 147.5 127 59.1
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 8.1e-34 147.5 123 56.9
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 8.1e-34 147.5 123 59.3
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.1e-34 147.5 129 55.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.1e-34 147.5 124 59.7
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.1e-33 147.1 129 57.4
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.1e-33 147.1 118 61.0
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.4e-33 146.7 123 60.2
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.4e-33 146.7 118 61.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.8e-33 146.4 121 61.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.8e-33 146.4 128 58.6
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.8e-33 146.4 118 61.0
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.4e-33 146.0 127 58.3
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.4e-33 146.0 125 59.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.1e-33 145.6 120 60.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.1e-33 145.6 122 59.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 4.0e-33 145.2 125 58.4
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 4.0e-33 145.2 119 59.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 4.0e-33 145.2 118 59.3
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.3e-33 144.8 127 57.5
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 5.3e-33 144.8 121 59.5
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 5.3e-33 144.8 118 61.0
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.9e-33 144.4 127 56.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.9e-33 144.4 121 60.3
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 6.9e-33 144.4 128 55.5
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 9.0e-33 144.1 126 55.6
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-32 143.7 121 59.5
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-32 143.7 118 60.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.2e-32 143.7 125 58.4
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.5e-32 143.3 121 58.7
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.5e-32 143.3 125 57.6
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-32 142.9 126 54.8
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 2.6e-32 142.5 118 59.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.6e-32 142.5 120 57.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.6e-32 142.5 121 58.7
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 3.4e-32 142.1 128 55.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.5e-32 141.7 135 56.3
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.8e-32 141.4 126 56.3
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 9.9e-32 140.6 126 57.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-31 140.2 120 55.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.3e-31 140.2 123 56.1
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.3e-31 140.2 138 54.3
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.7e-31 139.8 120 57.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.7e-31 139.8 118 57.6
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.7e-31 139.8 123 56.1
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.2e-31 139.4 125 57.6
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.2e-31 139.4 123 56.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.9e-31 139.0 120 58.3
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.8e-31 138.7 124 57.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 4.9e-31 138.3 131 51.9
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 4.9e-31 138.3 131 52.7
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.9e-31 138.3 123 56.1
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.9e-31 138.3 122 59.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 6.4e-31 137.9 127 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 8.4e-31 137.5 118 55.9
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.1e-30 137.1 120 56.7
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.1e-30 137.1 123 54.5
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.4e-30 136.7 126 55.6
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-30 136.3 129 55.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-30 136.3 129 55.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.2e-30 135.2 110 59.1
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 4.2e-30 135.2 131 51.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.2e-30 135.2 129 55.8
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 5.5e-30 134.8 120 55.8
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 9.3e-30 134.0 118 55.9
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 9.3e-30 134.0 120 55.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.6e-29 133.3 117 57.3
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.1e-29 132.9 119 55.5
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.7e-29 132.5 116 56.9
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 3.5e-29 132.1 119 54.6
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.0e-28 130.6 119 52.1
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.8e-28 129.8 118 54.2
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.6e-26 123.2 107 57.0
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.7e-26 122.1 115 55.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.4e-25 120.2 108 55.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.8e-25 119.8 121 49.6
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 2.4e-25 119.4 135 45.2
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.4e-25 119.4 120 48.3
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.9e-25 117.9 121 52.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.6e-24 115.9 124 51.6
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.8e-24 114.8 109 52.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-23 113.2 120 49.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 4.9e-23 111.7 118 50.8
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.1e-22 107.8 99 51.5
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.7e-21 105.9 108 51.9
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 8.7e-20 100.9 128 45.3
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 2.5e-19 99.4 82 59.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.6e-16 89.4 66 68.2
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.5e-16 88.6 112 39.3
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 7.2e-14 81.3 65 60.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 9.3e-14 80.9 57 64.9
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.3e-14 80.9 66 53.0
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.7e-13 79.3 70 55.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.8e-12 76.6 73 54.8
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.3e-12 76.3 65 52.3
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-11 73.6 64 56.2
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-11 73.6 64 56.2
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-10 70.1 55 61.8
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.2e-10 67.8 124 33.9
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-09 67.0 51 62.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 5.3e-09 65.1 60 56.7
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.0e-08 63.2 60 53.3
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.6e-08 62.8 60 51.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.4e-08 62.4 82 46.3
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 5.0e-07 58.5 61 52.5
CARHR086300 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.5e-06 56.2 54 57.4


User provided reference genes

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