Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 3.0e-90 335.1 166 100.0
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 3.0e-90 335.1 166 100.0
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 2.4e-87 325.5 166 97.6
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 2.4e-87 325.5 166 97.6
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 7.0e-87 323.9 166 97.0
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 5.9e-86 320.9 166 95.8
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.0e-85 320.1 166 95.2
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 1.0e-85 320.1 166 95.2
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-85 320.1 166 95.2
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-85 320.1 166 95.2
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-85 320.1 166 95.2
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-85 320.1 166 95.2
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 9.5e-84 313.5 160 96.9
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 3.1e-74 282.0 166 84.9
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 3.1e-74 282.0 166 84.9
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-71 273.5 166 80.7
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 9.5e-68 260.4 152 84.2
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 2.3e-66 255.8 165 78.2
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 9.9e-65 250.4 165 75.8
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 3.6e-59 231.9 160 73.1
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 3.6e-59 231.9 160 73.1
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 4.7e-59 231.5 165 71.5
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 4.7e-59 231.5 165 71.5
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 4.7e-59 231.5 165 71.5
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 4.4e-57 224.9 165 69.1
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 4.4e-57 224.9 165 69.1
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 4.4e-57 224.9 165 69.1
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.2e-47 192.2 161 60.2
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.0e-46 188.0 161 57.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.0e-46 188.0 160 58.8
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 7.8e-46 187.6 162 58.6
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 5.1e-45 184.9 161 55.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.5e-44 182.6 160 56.2
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 4.8e-43 178.3 165 59.4
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 3.1e-42 175.6 161 57.1
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 3.1e-42 175.6 161 57.1
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.1e-42 175.6 161 54.7
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 5.3e-42 174.9 161 56.5
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 2.0e-41 172.9 165 58.8
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.9e-40 169.1 168 55.4
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 1.8e-37 159.8 88 83.0
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.8e-35 151.8 155 51.6
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.0e-34 147.5 165 47.3
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 1.6e-30 136.7 165 44.2
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.7e-29 131.0 165 44.2
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.5e-28 130.2 165 43.6
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.7e-28 128.3 161 46.6
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 7.4e-28 127.9 117 54.7
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.6e-28 127.5 162 48.1
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-27 127.1 161 44.1
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.6e-27 126.7 161 46.6
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.1e-27 126.3 161 45.3
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.8e-27 125.2 161 46.0
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.2e-25 120.6 161 43.5
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.5e-25 120.2 209 36.8
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 4.5e-25 118.6 62 88.7
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.8e-25 118.2 144 44.4
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 3.2e-23 112.5 150 43.3
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.7e-21 104.8 161 39.8
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.6e-19 100.1 161 37.3
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.3e-19 98.2 122 38.5
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 1.5e-17 93.6 69 72.5
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.0e-17 93.2 126 42.1
BcaC05g29303 Brassica carinata HOM05D007923 ORTHO05D009651 2.6e-17 92.8 50 96.0
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-16 90.9 67 70.1
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-16 90.9 67 70.1
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 4.2e-15 85.5 113 38.9
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.0e-13 79.3 153 33.3
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 6.7e-13 78.2 104 41.3
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.5e-12 77.0 90 41.1
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.3e-12 75.5 132 33.3
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.3e-12 75.5 127 32.3
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.8e-11 72.0 111 32.4
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 1.5e-09 67.0 156 29.5
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.0e-09 66.6 77 40.3
PGR031G1959 Punica granatum HOM05D007923 ORTHO05D009651 4.5e-09 65.5 84 36.9
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 5.9e-09 65.1 82 39.0
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.3e-08 63.9 87 36.8
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 1.9e-07 60.1 79 38.0
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 3.2e-07 59.3 90 33.3
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 1.6e-06 57.0 76 32.9
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 2.1e-06 56.6 113 30.1
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 2.1e-06 56.6 82 36.6


User provided reference genes

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