Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-139 500.0 257 100.0
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.1e-131 473.4 242 99.6
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.2e-125 453.4 259 92.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.3e-124 449.9 259 91.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.9e-123 446.0 246 94.7
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.1e-122 442.6 249 93.6
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 3.3e-120 435.3 243 90.5
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.4e-118 429.1 242 90.1
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.7e-116 422.9 242 90.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 7.2e-115 417.5 256 86.3
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.2e-114 416.8 242 88.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 8.8e-105 384.0 252 80.6
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 4.6e-93 345.1 238 76.1
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.3e-92 343.6 240 74.2
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 5.6e-91 338.2 238 75.6
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.0e-89 334.0 238 73.1
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.9e-87 325.9 236 72.5
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.9e-87 325.1 239 73.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.9e-87 325.1 241 71.0
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 3.5e-85 318.9 236 71.2
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.5e-85 318.9 238 71.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.3e-83 312.4 242 71.5
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 7.3e-83 311.2 230 72.6
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.6e-82 308.9 238 70.6
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.8e-81 306.6 230 71.7
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.8e-81 306.6 230 71.7
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.0e-80 303.1 234 70.9
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.7e-76 290.0 221 67.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.2e-74 283.9 223 67.3
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.7e-71 273.5 217 65.0
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 2.2e-71 273.1 217 65.0
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.9e-71 272.7 221 63.8
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 8.4e-71 271.2 233 61.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 8.4e-71 271.2 219 64.4
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.4e-70 270.4 217 65.0
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.4e-70 270.4 217 64.5
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.9e-70 270.0 231 60.2
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 2.4e-70 269.6 225 62.2
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 4.1e-70 268.9 223 62.8
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 5.4e-70 268.5 231 62.8
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 9.2e-70 267.7 226 62.4
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.6e-69 266.9 220 63.2
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.1e-69 266.5 236 61.9
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.0e-69 265.0 225 61.3
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.3e-68 263.8 239 60.7
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.3e-68 263.8 226 62.8
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.3e-68 263.1 238 60.9
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 8.6e-68 261.2 228 61.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.1e-67 260.8 224 62.1
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.9e-67 260.0 240 60.8
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 2.5e-67 259.6 230 61.7
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 2.5e-67 259.6 222 61.7
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 5.6e-67 258.5 221 60.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 9.6e-67 257.7 234 59.4
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.1e-66 256.5 214 64.5
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.1e-66 256.5 232 62.1
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.8e-66 256.1 223 60.5
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 3.6e-66 255.8 225 60.0
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 4.7e-66 255.4 231 61.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 6.2e-66 255.0 239 59.8
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.4e-65 253.8 241 57.3
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.8e-65 253.4 212 61.8
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.8e-65 253.4 225 59.6
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.4e-65 253.1 234 59.8
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 3.1e-65 252.7 221 60.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 4.0e-65 252.3 241 58.5
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 6.9e-65 251.5 217 60.4
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.2e-64 250.8 234 59.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.6e-64 249.6 219 60.7
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 5.8e-64 248.4 234 59.0
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 5.8e-64 248.4 223 59.2
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 9.9e-64 247.7 241 58.5
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.3e-63 247.3 262 54.6
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 2.2e-63 246.5 240 57.9
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 3.8e-63 245.7 220 60.0
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 4.9e-63 245.4 225 56.9
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.4e-62 243.8 217 60.8
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.4e-62 243.8 225 59.6
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 4.2e-62 242.3 141 89.4
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.2e-61 240.7 209 62.2
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.6e-61 240.4 227 58.1
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.0e-60 237.7 153 73.2
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.3e-60 237.3 218 60.1
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 3.0e-60 236.1 234 57.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.6e-60 235.0 264 52.7
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.5e-59 233.8 240 54.6
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.5e-59 233.8 195 63.6
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.5e-59 233.0 171 64.3
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 3.3e-59 232.6 203 62.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.3e-59 232.3 256 51.6
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 9.6e-59 231.1 152 72.4
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.3e-58 230.7 235 54.5
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.6e-58 230.3 158 69.0
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-58 229.6 223 57.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 8.1e-58 228.0 220 56.8
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.1e-57 227.6 234 52.1
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 2.4e-57 226.5 231 51.5
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.5e-56 223.8 281 48.8
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 5.8e-56 221.9 210 55.2
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.4e-54 215.3 235 52.8
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 7.1e-54 214.9 164 63.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.2e-53 214.2 163 63.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.1e-53 213.4 212 58.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 2.5e-51 206.5 228 50.4
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 4.8e-50 202.2 152 64.5
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 9.9e-48 194.5 133 65.4
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.1e-46 191.0 144 62.5
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 6.0e-45 185.3 225 48.4
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 9.6e-43 177.9 174 52.3
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.6e-42 177.2 139 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.2e-42 175.3 137 61.3
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.4e-41 174.1 171 56.7
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.8e-41 173.7 224 48.2
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 4.5e-40 169.1 176 51.1
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.8e-39 166.0 159 57.9
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 4.2e-38 162.5 136 55.1
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 2.1e-37 160.2 113 65.5
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 1.9e-35 153.7 133 54.9
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.1e-29 133.7 181 46.4
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.1e-29 132.1 99 68.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.1e-27 127.9 70 80.0
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.3e-27 125.9 92 67.4
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 4.8e-26 122.5 119 56.3
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 2.5e-22 110.2 159 39.6
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 4.4e-19 99.4 54 77.8
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 3.4e-16 89.7 74 59.5
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 5.0e-15 85.9 106 45.3
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.2e-14 82.8 54 70.4
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.1e-13 80.5 118 40.7
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 3.5e-08 63.2 128 28.9
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 5.9e-08 62.4 217 30.4
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 5.0e-07 59.3 36 75.0


User provided reference genes

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