Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.7e-264 914.8 653 100.0
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 3.4e-246 855.1 655 96.0
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 9.7e-225 783.9 659 88.8
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.0e-221 773.9 659 88.3
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.0e-221 773.9 659 88.3
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 4.6e-198 695.3 692 66.2
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.7e-190 669.5 691 64.1
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 1.9e-183 646.7 701 71.0
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 5.4e-167 592.0 693 61.9
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 9.0e-162 574.7 696 65.9
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.0e-141 508.1 692 53.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.2e-131 473.8 615 55.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.2e-110 404.8 498 56.2
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 4.0e-109 399.8 499 56.3
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 5.2e-109 399.4 499 56.5
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.6e-89 334.7 415 61.2
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.3e-71 273.9 811 33.5
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.8e-69 268.1 479 44.1
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.1e-66 258.8 746 33.2
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.9e-63 248.1 785 35.5
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.5e-63 247.7 761 33.0
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 9.6e-63 245.7 789 34.0
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.6e-63 245.7 755 37.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.6e-62 243.8 770 32.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.7e-62 243.4 780 32.9
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.7e-62 243.4 751 38.9
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.4e-61 241.1 784 32.3
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.4e-61 241.1 790 32.2
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.2e-61 240.0 748 37.2
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.0e-60 238.0 775 32.0
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 2.6e-60 237.7 763 32.9
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 3.4e-60 237.3 769 35.9
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 3.4e-60 237.3 785 35.0
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.4e-60 237.3 811 33.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 7.6e-60 236.1 765 35.3
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.9e-59 233.4 792 32.8
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.1e-58 232.3 785 35.2
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.1e-58 232.3 776 31.2
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.9e-58 231.5 778 31.5
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.4e-58 231.1 766 37.2
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.2e-58 230.7 775 34.7
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 4.2e-58 230.3 786 34.0
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 5.4e-58 229.9 768 34.2
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.2e-57 228.8 769 33.8
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.3e-56 224.6 782 31.1
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.9e-56 223.8 773 35.6
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 5.1e-56 223.4 735 34.3
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.3e-55 220.7 801 32.8
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.8e-53 214.9 755 33.4
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 3.1e-53 214.2 792 30.6
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 6.9e-53 213.0 753 33.2
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.2e-52 212.2 775 32.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.0e-52 211.5 763 32.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.8e-52 209.9 752 31.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 7.6e-52 209.5 757 33.6
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 9.9e-52 209.1 778 32.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 4.9e-51 206.8 713 35.5
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.9e-51 206.8 752 31.0
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.4e-51 206.5 774 30.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 6.4e-51 206.5 723 32.4
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 8.4e-51 206.1 637 37.7
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.2e-50 204.1 735 32.2
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 5.4e-50 203.4 769 32.9
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.6e-49 201.8 782 33.8
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-49 201.8 656 34.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.7e-49 201.1 713 34.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 3.5e-49 200.7 721 34.4
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 4.6e-49 200.3 761 39.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-48 198.7 721 34.5
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.7e-48 198.4 761 35.3
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 3.0e-48 197.6 697 40.3
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.9e-48 197.2 599 36.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 3.9e-48 197.2 713 36.5
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.9e-47 194.9 755 30.9
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.9e-47 194.9 768 34.8
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.9e-47 194.9 781 33.0
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 3.6e-46 190.7 716 30.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 6.2e-46 189.9 840 31.9
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.1e-45 189.1 716 31.7
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.1e-45 189.1 683 34.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.4e-45 188.7 731 33.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.8e-45 188.3 639 31.1
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.0e-45 187.2 828 32.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.0e-45 187.2 652 33.9
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 4.0e-45 187.2 743 32.0
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 6.9e-45 186.4 762 32.0
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.2e-44 185.7 629 34.2
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.5e-44 185.3 801 28.8
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 5.8e-44 183.3 666 36.3
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 9.9e-44 182.6 878 33.8
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 4.9e-43 180.3 709 35.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 6.4e-43 179.9 674 30.7
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 9.3e-42 176.0 718 29.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 6.0e-41 173.3 778 31.2
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 7.9e-41 172.9 755 31.3
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.8e-40 171.8 689 29.0
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 8.7e-40 169.5 551 36.1
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.1e-39 169.1 705 35.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.5e-39 167.9 646 29.9
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 2.5e-39 167.9 648 30.7
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 3.3e-39 167.5 742 29.1
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 7.4e-39 166.4 816 29.8
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 9.6e-39 166.0 691 33.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.3e-38 165.6 683 31.8
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-38 165.6 718 31.5
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.6e-38 165.2 756 33.5
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 4.8e-38 163.7 688 33.7
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.4e-37 161.4 655 30.2
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 5.3e-37 160.2 787 28.3
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 9.0e-37 159.5 681 28.9
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.2e-36 159.1 645 29.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 3.4e-36 157.5 670 31.5
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.0e-35 156.0 725 28.4
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 6.5e-35 153.3 525 29.0
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 8.4e-35 152.9 792 31.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.4e-34 152.1 610 30.7
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.2e-34 150.6 762 29.5
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.1e-34 149.8 820 29.8
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.2e-33 149.1 664 29.1
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 7.9e-33 146.4 619 35.4
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 7.9e-33 146.4 592 29.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.0e-32 146.0 633 31.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.7e-32 143.3 634 30.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 8.7e-32 142.9 799 27.5
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.5e-31 141.4 620 32.3
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.3e-31 141.0 781 29.2
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 9.6e-31 139.4 638 30.4
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.3e-30 139.0 716 29.2
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.4e-29 135.6 806 29.2
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.6e-28 131.3 675 31.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.4e-28 131.0 728 29.0
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.8e-28 130.2 445 36.2
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 2.2e-27 128.3 510 36.9
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.1e-26 125.9 642 31.5
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.6e-25 122.1 172 46.5
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 7.9e-25 119.8 659 30.5
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.5e-23 115.5 732 29.4
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.3e-22 110.2 212 56.6
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.4e-21 108.2 630 32.5
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 6.9e-21 106.7 725 29.1
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.6e-20 104.8 486 34.4
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 3.4e-20 104.4 189 44.4
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.7e-19 102.1 728 28.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.2e-18 97.8 742 28.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 9.4e-18 96.3 634 28.5
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.6e-17 95.5 851 25.0
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 2.7e-17 94.7 837 26.6
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.9e-16 90.9 776 26.4
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 5.1e-16 90.5 192 36.5
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 6.7e-16 90.1 297 30.6
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 3.3e-15 87.8 156 38.5
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.3e-14 85.9 186 36.0
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.1e-13 81.3 147 40.1
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 5.3e-13 80.5 859 27.5
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 2.6e-12 78.2 50 78.0
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.4e-12 77.8 321 32.4
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.5e-11 73.2 180 30.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-10 72.8 162 40.7
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.9e-10 72.0 172 39.0
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 7.2e-10 70.1 178 39.3
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.2e-09 69.3 274 38.3
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.9e-09 66.6 47 63.8
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.4e-08 65.9 605 23.5
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.4e-08 65.9 114 47.4
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.7e-08 63.5 234 28.2
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.2e-06 58.5 144 42.4


User provided reference genes

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