Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 2.9e-177 625.2 330 100.0
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 1.3e-161 573.2 331 91.2
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 1.0e-153 547.0 330 87.9
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 1.2e-146 523.5 330 84.8
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 5.1e-121 438.3 342 75.7
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 2.8e-119 432.6 341 73.3
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 2.4e-118 429.5 341 73.6
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 2.4e-118 429.5 341 73.6
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 2.4e-118 429.5 341 73.6
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 3.1e-118 429.1 341 74.5
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 4.2e-115 418.7 341 71.8
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 5.4e-115 418.3 336 72.3
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 1.3e-111 407.1 347 69.7
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.2e-109 400.6 337 69.4
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 9.0e-102 374.4 228 88.6
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.8e-97 360.1 304 70.1
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.4e-83 313.9 338 58.3
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 4.7e-74 282.3 231 73.2
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 3.5e-53 213.0 337 47.8
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 5.0e-44 182.6 392 42.1
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 4.2e-43 179.5 385 41.0
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 9.5e-43 178.3 389 40.6
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 8.0e-42 175.3 380 40.5
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 9.8e-40 168.3 384 40.4
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.9e-39 166.0 332 41.3
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 8.3e-39 165.2 378 40.5
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 4.6e-37 159.5 378 38.6
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 4.6e-37 159.5 378 38.6
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 5.9e-37 159.1 380 38.9
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 1.0e-36 158.3 377 38.2
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 1.0e-36 158.3 379 39.6
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 1.5e-35 154.5 383 38.4
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 1.5e-35 154.5 378 36.2
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 1.5e-35 154.5 380 39.2
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 4.3e-35 152.9 380 38.9
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 7.3e-35 152.1 384 38.0
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 3.4e-32 143.3 251 47.4
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 2.3e-25 120.6 442 31.4
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 1.5e-24 117.9 330 32.4
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 1.1e-22 111.7 360 32.8
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.2e-22 108.6 351 33.9
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 1.2e-21 108.2 352 33.2
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 7.3e-19 99.0 350 31.7
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 2.8e-18 97.1 344 34.0
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 6.8e-17 92.4 369 31.2
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 6.8e-17 92.4 349 32.1
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 2.0e-16 90.9 349 32.1
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 3.4e-16 90.1 351 31.1
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 4.4e-16 89.7 347 31.7
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 5.8e-16 89.4 369 32.2
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 2.2e-15 87.4 356 29.8
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 3.7e-15 86.7 347 30.8
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 1.4e-14 84.7 354 29.4
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 2.4e-14 84.0 348 30.5
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 4.1e-14 83.2 362 28.5
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 7.1e-14 82.4 359 30.1
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 9.2e-14 82.0 335 28.4
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.1e-13 80.9 328 32.9
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 7.8e-13 79.0 363 29.8
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 3.0e-12 77.0 359 29.8
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 5.1e-12 76.3 344 31.1
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 8.6e-12 75.5 357 28.6
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.1e-11 75.1 338 29.0
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 2.5e-11 73.9 386 29.0
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 3.3e-11 73.6 361 31.0
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 5.6e-11 72.8 359 28.4
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 5.6e-11 72.8 346 29.8
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 3.6e-10 70.1 363 27.5
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 3.6e-10 70.1 321 29.6
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.1e-09 68.6 345 29.6
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.4e-09 68.2 344 29.9
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 1.4e-09 68.2 356 27.0
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 1.4e-09 68.2 351 29.1
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 1.4e-09 68.2 359 27.9
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 4.0e-09 66.6 321 29.0
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.2e-08 65.1 344 29.9
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 1.5e-08 64.7 352 28.7
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 2.6e-08 63.9 188 28.2
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 3.4e-08 63.5 191 31.4
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 7.6e-08 62.4 348 25.6
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 7.6e-08 62.4 344 29.4
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 2.9e-07 60.5 338 27.8
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 4.9e-07 59.7 229 31.4
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.1e-06 58.5 202 33.2
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 1.4e-06 58.2 225 29.8
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 1.4e-06 58.2 357 27.5
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 1.9e-06 57.8 362 27.1
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 2.4e-06 57.4 325 26.5
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 3.2e-06 57.0 204 30.9
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 3.2e-06 57.0 34 76.5
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 4.2e-06 56.6 337 27.6
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 5.4e-06 56.2 339 28.0
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 7.1e-06 55.8 366 25.4
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 7.1e-06 55.8 173 30.6
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 9.3e-06 55.5 354 27.4


User provided reference genes

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