Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 2.9e-34 147.9 69 100.0
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 4.9e-34 147.1 69 98.6
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 4.9e-34 147.1 69 98.6
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 4.9e-34 147.1 69 98.6
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 1.4e-33 145.6 69 98.6
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.6e-32 142.1 69 94.2
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 2.1e-32 141.7 69 94.2
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 6.0e-32 140.2 69 92.8
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 1.0e-31 139.4 69 89.9
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 2.3e-31 138.3 69 88.4
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 8.6e-31 136.3 69 87.0
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 8.6e-31 136.3 69 87.0
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 1.9e-30 135.2 69 88.4
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 9.5e-30 132.9 69 88.4
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 6.2e-29 130.2 69 85.5
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 6.2e-29 130.2 69 85.5
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 6.2e-29 130.2 69 85.5
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 6.2e-29 130.2 69 85.5
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 8.1e-29 129.8 69 85.5
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 8.1e-29 129.8 69 85.5
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 87.0
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 87.0
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.8e-28 128.6 69 84.1
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 2.3e-28 128.3 69 87.0
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 6.8e-28 126.7 70 88.6
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.2e-27 125.9 69 85.5
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.4e-27 124.0 67 79.1
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 7.6e-27 123.2 69 78.3
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 1.7e-26 122.1 69 72.5
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 73.9
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.8e-26 120.9 69 75.4
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 72.5
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 73.9
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 8.4e-26 119.8 69 73.9
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 8.4e-26 119.8 69 73.9
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.1e-25 119.4 67 76.1
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.1e-25 119.4 67 76.1
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 73.9
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 72.5
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 1.4e-25 119.0 69 71.0
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 1.9e-25 118.6 69 75.4
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 72.5
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 73.9
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 71.0
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 73.9
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 72.5
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 71.0
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 73.9
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 71.0
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 73.9
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 73.9
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 71.0
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 5.4e-25 117.1 69 72.5
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 5.4e-25 117.1 68 72.1
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 68.1
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 69.6
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 71.0
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 69.6
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 72.5
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 69.6
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 1.6e-24 115.5 67 71.6
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 69.6
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 72.5
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 69.6
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 1.6e-24 115.5 67 74.6
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 71.0
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 71.0
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 1.6e-24 115.5 67 71.6
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 69.6
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 69.6
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 69.6
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 69.6
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 71.0
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 68.1
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 71.0
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 2.1e-24 115.2 69 69.6
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 69.6
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 71.0
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 69.6
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 3.5e-24 114.4 69 69.6
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 3.5e-24 114.4 69 71.0
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 71.0
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 69.6
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 71.0
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 69.6
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 69.6
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 71.0
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 72.5
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 6.0e-24 113.6 67 70.1
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 66.7
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 68.1
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 71.0
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 7.8e-24 113.2 67 70.1
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 72.5
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 69.6
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 1.0e-23 112.8 68 70.6
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 68.1
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 66.7
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 68.1
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 68.1
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 68.1
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 69.6
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 69.6
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 68.1
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 66.7
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 71.0
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 1.3e-23 112.5 67 68.7
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 68.1
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.7e-23 112.1 67 71.6
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 2.3e-23 111.7 68 69.1
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 67.2
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 69.6
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 3.0e-23 111.3 68 67.6
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 66.7
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 66.7
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 69.6
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 3.9e-23 110.9 67 70.1
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 5.1e-23 110.5 67 73.1
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 5.1e-23 110.5 68 63.2
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.1e-22 109.4 67 65.7
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 68.1
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 68.1
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 69.6
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 67.2
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 1.5e-22 109.0 69 68.1
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.5e-22 109.0 69 66.7
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 1.9e-22 108.6 67 68.7
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 2.5e-22 108.2 67 65.7
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 68.1
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 3.3e-22 107.8 68 69.1
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.3e-22 107.5 67 64.2
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 66.7
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 66.7
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 66.7
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 5.6e-22 107.1 67 70.1
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 5.6e-22 107.1 61 77.0
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 66.7
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 9.6e-22 106.3 67 67.2
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 65.2
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 65.2
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 65.2
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 66.7
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 66.7
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 66.7
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 65.2
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 65.2
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 65.2
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 65.2
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 2.1e-21 105.1 67 64.2
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 2.8e-21 104.8 69 63.8
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 4.7e-21 104.0 67 61.2
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 63.8
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 63.8
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 8.1e-21 103.2 69 62.3
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 1.4e-20 102.4 69 65.2
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 5.2e-20 100.5 69 60.9
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 8.9e-20 99.8 62 67.7
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 8.9e-20 99.8 67 65.7
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.2e-19 99.4 69 60.9
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 2.6e-19 98.2 69 62.3
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 3.4e-19 97.8 67 59.7
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 4.4e-19 97.4 69 59.4
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 4.9e-18 94.0 67 56.7
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 3.2e-17 91.3 66 63.6
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 4.2e-17 90.9 60 63.3
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.2e-17 90.9 56 69.6
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 2.7e-16 88.2 49 77.6
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 7.8e-16 86.7 57 66.7
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 3.9e-15 84.3 56 64.3
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 1.6e-13 79.0 43 79.1
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 6.9e-12 73.6 50 62.0
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 1.5e-11 72.4 47 70.2
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 2.6e-11 71.6 64 46.9
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 3.4e-11 71.2 41 75.6
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 3.2e-09 64.7 41 68.3
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 2.7e-08 61.6 39 64.1
Eucgr.C02014 Eucalyptus grandis HOM05D002778 ORTHO05D003112 4.3e-06 54.3 64 35.9
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 5.6e-06 53.9 63 33.3
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 7.4e-06 53.5 59 37.3


User provided reference genes

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