Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.7e-160 568.2 284 100.0
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 8.4e-157 557.0 284 97.9
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 8.4e-157 557.0 284 97.9
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 4.2e-156 554.7 284 97.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.2e-148 528.5 266 98.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 9.0e-143 510.4 285 92.3
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.9e-138 495.0 297 85.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.5e-137 492.3 293 86.0
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 5.3e-135 484.6 289 86.2
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 5.3e-135 484.6 289 86.2
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 6.9e-135 484.2 291 85.6
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 6.9e-135 484.2 291 85.6
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-134 483.0 289 85.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.7e-131 472.2 299 82.3
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.0e-129 466.1 299 80.9
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-122 443.0 287 80.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 5.2e-122 441.4 287 80.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-121 439.9 287 80.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-121 439.9 287 80.1
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.3e-120 434.5 287 80.1
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-119 433.3 287 78.7
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-119 432.6 287 78.7
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.0e-113 412.9 280 76.1
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 6.3e-112 407.9 284 76.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.0e-111 404.4 294 72.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.7e-110 402.5 283 72.8
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.7e-109 399.8 289 73.0
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.5e-108 396.0 293 71.3
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 9.5e-100 367.5 227 78.9
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.6e-99 366.7 259 71.4
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.8e-98 363.2 220 80.9
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 6.8e-98 361.3 230 78.7
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.5e-97 360.1 273 68.9
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.6e-97 359.4 226 78.8
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.4e-97 359.0 265 68.3
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.4e-97 358.6 258 71.3
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 5.7e-97 358.2 220 79.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 7.5e-97 357.8 216 81.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.5e-97 357.8 216 81.0
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.3e-96 357.1 248 73.8
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.3e-96 357.1 218 80.3
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-96 356.7 216 81.0
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.7e-96 355.5 270 69.3
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 4.9e-96 355.1 268 69.0
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 8.3e-96 354.4 232 77.2
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.4e-95 353.6 229 77.7
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.2e-95 352.4 254 68.5
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.2e-94 350.5 266 68.8
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.7e-94 349.4 224 76.3
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.7e-93 346.7 253 68.8
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 2.3e-93 346.3 215 78.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.9e-93 345.5 234 74.4
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 5.0e-93 345.1 244 70.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.9e-92 343.2 240 72.9
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.9e-92 343.2 265 66.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.3e-92 342.4 231 74.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.3e-92 342.4 214 77.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 7.3e-92 341.3 228 73.7
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 9.5e-92 340.9 217 75.1
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 9.5e-92 340.9 224 74.6
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.1e-91 339.7 235 71.9
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.8e-91 339.3 235 71.9
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 3.6e-91 339.0 260 66.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 4.7e-91 338.6 265 65.3
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 4.7e-91 338.6 231 73.6
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 6.2e-91 338.2 273 64.8
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.0e-91 337.8 220 74.5
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 8.0e-91 337.8 260 66.2
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.0e-90 337.4 216 75.9
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.0e-90 337.4 225 73.8
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.3e-90 336.3 231 73.2
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.1e-90 335.9 229 73.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 4.0e-90 335.5 280 63.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.2e-90 335.1 211 76.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 5.2e-90 335.1 232 71.6
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.2e-90 335.1 211 78.2
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 8.9e-90 334.3 267 64.0
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 8.9e-90 334.3 210 77.1
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.2e-89 334.0 235 71.5
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 5.8e-89 331.6 218 75.7
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 5.8e-89 331.6 218 75.7
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 2.9e-88 329.3 216 74.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.7e-88 328.9 259 68.3
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 6.4e-88 328.2 221 72.4
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.9e-87 326.6 223 71.3
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 3.2e-87 325.9 220 72.3
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.2e-86 323.9 223 70.9
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.6e-86 323.6 230 71.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.0e-86 323.2 261 64.0
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.7e-86 322.8 261 64.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 4.6e-86 322.0 264 65.5
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.0e-85 320.9 210 76.7
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.7e-85 320.1 255 63.5
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.3e-85 319.7 217 75.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.3e-85 319.7 273 62.6
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 3.0e-85 319.3 225 71.6
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.0e-85 319.3 249 64.7
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.6e-85 318.2 261 63.6
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 8.6e-85 317.8 212 72.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-84 317.0 235 66.8
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.5e-84 317.0 235 66.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.5e-84 316.2 239 68.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.5e-84 316.2 253 63.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 3.3e-84 315.8 235 66.8
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 4.3e-84 315.5 210 73.8
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.3e-84 315.5 259 64.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.3e-84 315.5 264 61.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.6e-84 315.1 235 66.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.6e-84 315.1 235 66.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.6e-84 315.1 235 66.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 9.5e-84 314.3 260 63.1
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.1e-83 313.2 263 62.7
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.1e-83 313.2 218 72.9
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.8e-83 312.8 222 70.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.6e-83 312.4 214 72.4
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.6e-83 312.4 222 70.3
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-82 310.5 224 70.1
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.8e-82 310.1 218 72.5
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 3.1e-82 309.3 212 72.2
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.2e-82 308.5 209 71.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 6.8e-82 308.1 248 64.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.9e-82 307.8 262 60.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 8.9e-82 307.8 207 72.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.2e-81 307.4 253 63.6
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.4e-81 305.8 219 69.4
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.4e-81 305.4 250 63.2
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 5.8e-81 305.1 210 71.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.5e-81 304.7 210 71.0
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 3.7e-80 302.4 232 66.8
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 6.4e-80 301.6 205 71.7
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.9e-79 300.1 211 71.6
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.4e-79 299.7 232 64.7
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 3.9e-77 292.4 222 67.1
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 8.6e-77 291.2 223 64.1
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-76 290.8 221 65.6
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.3e-76 289.3 171 80.1
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 9.5e-76 287.7 200 70.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.7e-75 285.4 216 64.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.8e-74 283.5 186 74.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.8e-74 281.6 178 77.0
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-71 274.2 222 64.0
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.6e-70 268.9 235 61.3
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.9e-63 246.9 195 63.1
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.3e-61 240.0 217 59.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 5.1e-61 238.8 206 57.3
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.3e-60 235.0 269 52.8
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 6.9e-58 228.4 137 82.5
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.0e-57 226.9 137 81.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.3e-56 224.2 229 55.0
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 6.4e-56 221.9 223 56.5
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.9e-55 220.3 220 53.6
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.2e-55 219.2 133 81.2
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.5e-49 199.1 211 47.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-47 194.5 220 47.7
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.5e-41 174.1 176 49.4
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.6e-38 164.1 173 54.3
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.6e-36 154.8 160 51.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.2e-27 125.2 83 81.9
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.9e-23 114.0 77 66.2
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.2e-15 85.5 71 53.5
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 6.1e-14 82.4 89 46.1
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.4e-10 70.5 76 57.9
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.6e-09 67.0 65 52.3
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-08 64.7 44 70.5
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 5.0e-08 62.8 75 46.7
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 6.5e-08 62.4 68 44.1
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.5e-07 60.5 40 70.0


User provided reference genes

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