Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p32530 Brassica napus HOM05D001503 ORTHO05D019807 1.5e-43 179.1 89 100.0
C05p49170 Brassica napus HOM05D001503 ORTHO05D019807 2.3e-36 155.2 112 76.8
BcaC05g28809 Brassica carinata HOM05D001503 ORTHO05D004525 1.6e-32 142.5 104 76.9
C05p49120 Brassica napus HOM05D001503 ORTHO05D004525 1.6e-32 142.5 104 76.9
BolC5t33655H Brassica oleracea HOM05D001503 ORTHO05D004525 1.6e-32 142.5 104 76.9
A05p32500 Brassica napus HOM05D001503 ORTHO05D004525 3.5e-32 141.4 104 76.0
BraA05t22076Z Brassica rapa HOM05D001503 ORTHO05D004525 3.5e-32 141.4 104 76.0
BcaB06g25815 Brassica carinata HOM05D001503 ORTHO05D004525 5.9e-32 140.6 104 76.0
Thhalv10020551m.g Eutrema salsugineum HOM05D001503 ORTHO05D004525 5.9e-32 140.6 104 75.0
Sp3g15460 Schrenkiella parvula HOM05D001503 ORTHO05D004525 1.0e-31 139.8 104 75.0
AL3G30280 Arabidopsis lyrata HOM05D001503 ORTHO05D004525 1.7e-31 139.0 104 75.0
CARHR092510 Cardamine hirsuta HOM05D001503 ORTHO05D004525 1.7e-31 139.0 104 75.0
AT3G17240 Arabidopsis thaliana HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
BcaC08g43003 Brassica carinata HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
A06p04750 Brassica napus HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
C06p02440 Brassica napus HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
BolC6t35371H Brassica oleracea HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
BraA06t23678Z Brassica rapa HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
Thhalv10011408m.g Eutrema salsugineum HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
Sp1g35010 Schrenkiella parvula HOM05D001503 ORTHO05D004525 2.9e-31 138.3 104 74.0
AT1G48030 Arabidopsis thaliana HOM05D001503 ORTHO05D004525 8.5e-31 136.7 104 73.1
BcaB07g33795 Brassica carinata HOM05D001503 ORTHO05D004525 8.5e-31 136.7 104 73.1
Carub.0003s1699 Capsella rubella HOM05D001503 ORTHO05D004525 8.5e-31 136.7 104 73.1
THA.LOC104820322 Tarenaya hassleriana HOM05D001503 ORTHO05D004525 8.5e-31 136.7 104 73.1
CARHR037670 Cardamine hirsuta HOM05D001503 ORTHO05D004525 1.1e-30 136.3 104 73.1
Aa31LG10G5680 Aethionema arabicum HOM05D001503 ORTHO05D004525 1.5e-30 136.0 104 72.1
Aa31LG8G4200 Aethionema arabicum HOM05D001503 ORTHO05D004525 1.9e-30 135.6 104 73.1
Carub.0001s3714 Capsella rubella HOM05D001503 ORTHO05D004525 2.5e-30 135.2 104 72.1
THA.LOC104818858 Tarenaya hassleriana HOM05D001503 ORTHO05D004525 2.1e-29 132.1 104 69.2
Cpa.g.sc146.65 Carica papaya HOM05D001503 ORTHO05D004525 2.3e-28 128.6 104 68.3
Atru.chr4.3081 Acer truncatum HOM05D001503 ORTHO05D004525 4.0e-28 127.9 104 67.3
Psat0s2692g0120 Pisum sativum HOM05D001503 ORTHO05D004525 5.2e-28 127.5 104 68.3
Gohir.A02G056500 Gossypium hirsutum HOM05D001503 ORTHO05D004525 6.7e-28 127.1 104 68.3
Gohir.D02G061700 Gossypium hirsutum HOM05D001503 ORTHO05D004525 6.7e-28 127.1 104 68.3
Gorai.005G069400 Gossypium raimondii HOM05D001503 ORTHO05D004525 6.7e-28 127.1 104 68.3
Medtr4g123070 Medicago truncatula HOM05D001503 ORTHO05D004525 6.7e-28 127.1 104 67.3
TPR.G12526 Trifolium pratense HOM05D001503 ORTHO05D004525 6.7e-28 127.1 104 67.3
COL.COLO4_34550 Corchorus olitorius HOM05D001503 ORTHO05D004525 8.8e-28 126.7 104 67.3
MD16G1145800 Malus domestica HOM05D001503 ORTHO05D004525 8.8e-28 126.7 104 67.3
Thecc.04G308000 Theobroma cacao HOM05D001503 ORTHO05D004525 8.8e-28 126.7 104 67.3
Lj4g0020015 Lotus japonicus HOM05D001503 ORTHO05D004525 1.2e-27 126.3 104 67.3
MD13G1147400 Malus domestica HOM05D001503 ORTHO05D004525 1.2e-27 126.3 104 66.3
Sed0001944 Sechium edule HOM05D001503 ORTHO05D004525 1.2e-27 126.3 104 67.3
Sed0005001 Sechium edule HOM05D001503 ORTHO05D004525 1.2e-27 126.3 104 67.3
TAR362G1063 Trochodendron aralioides HOM05D001503 ORTHO05D019807 1.2e-27 126.3 104 69.2
arahy.Tifrunner.gnm1.ann1.UP4XN2 Arachis hypogaea HOM05D001503 ORTHO05D004525 1.5e-27 125.9 104 67.3
arahy.Tifrunner.gnm1.ann1.X7XT05 Arachis hypogaea HOM05D001503 ORTHO05D004525 1.5e-27 125.9 104 67.3
Ciclev10004793m.g Citrus clementina HOM05D001503 ORTHO05D004525 1.5e-27 125.9 104 67.3
Glyma.17G037900 Glycine max HOM05D001503 ORTHO05D004525 1.5e-27 125.9 104 67.3
Ca_21400_v3 Cicer arietinum L. HOM05D001503 ORTHO05D004525 2.0e-27 125.6 104 68.3
MELO3C021247.2 Cucumis melo HOM05D001503 ORTHO05D004525 2.0e-27 125.6 104 66.3
Eucgr.H04086 Eucalyptus grandis HOM05D001503 ORTHO05D004525 2.0e-27 125.6 104 68.3
Lalb_Chr07g0181861 Lupinus albus HOM05D001503 ORTHO05D004525 2.6e-27 125.2 104 67.3
Lalb_Chr13g0298771 Lupinus albus HOM05D001503 ORTHO05D004525 2.6e-27 125.2 104 67.3
CiPaw.01G133000 Carya illinoinensis HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 67.3
MELO3C006734.2 Cucumis melo HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 66.3
Duzib212G0364 Durio zibethinus HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 67.3
Glyma.07G232900 Glycine max HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 66.3
Phvul.003G118800 Phaseolus vulgaris HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 66.3
Prupe.1G110900 Prunus persica HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 67.3
PGR004G0786 Punica granatum HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 66.3
VMungo1215G0600 Vigna mungo HOM05D001503 ORTHO05D004525 3.3e-27 124.8 104 66.3
CsaV3_3G015360 Cucumis sativus L. HOM05D001503 ORTHO05D004525 4.4e-27 124.4 104 65.4
Solyc05g053300.3 Solanum lycopersicum HOM05D001503 ORTHO05D004525 4.4e-27 124.4 104 67.3
Sopen05g031810 Solanum pennellii HOM05D001503 ORTHO05D004525 4.4e-27 124.4 104 67.3
PGSC0003DMG400027156 Solanum tuberosum HOM05D001503 ORTHO05D004525 4.4e-27 124.4 104 67.3
CANSAT78G1107 Cannabis sativa HOM05D001503 ORTHO05D004525 5.7e-27 124.0 104 67.3
Cfa015697 Carpinus fangiana HOM05D001503 ORTHO05D004525 5.7e-27 124.0 104 66.3
ClCG05G006730 Citrullus lanatus HOM05D001503 ORTHO05D004525 5.7e-27 124.0 104 66.3
Haze_00825 Corylus avellana HOM05D001503 ORTHO05D004525 5.7e-27 124.0 104 66.3
Duzib151G0855 Durio zibethinus HOM05D001503 ORTHO05D004525 5.7e-27 124.0 104 66.3
CiPaw.02G071800 Carya illinoinensis HOM05D001503 ORTHO05D004525 7.5e-27 123.6 104 66.3
Peaxi162Scf00126g01412 Petunia axillaris HOM05D001503 ORTHO05D004525 7.5e-27 123.6 104 67.3
PGR031G3902 Punica granatum HOM05D001503 ORTHO05D004525 7.5e-27 123.6 104 66.3
QL06p013389 Quercus lobata HOM05D001503 ORTHO05D004525 7.5e-27 123.6 103 66.0
EL10Ac3g06287 Beta vulgaris HOM05D001503 ORTHO05D004525 9.7e-27 123.2 104 67.3
Nitab4.5_0005769g0030 Nicotiana tabacum HOM05D001503 ORTHO05D004525 9.7e-27 123.2 104 67.3
TAR633G0750 Trochodendron aralioides HOM05D001503 ORTHO05D004525 9.7e-27 123.2 104 67.3
Hma1.2p1_1206F.1_g267020 Hydrangea macrophylla HOM05D001503 ORTHO05D004525 1.3e-26 122.9 104 66.3
Lj6A697T24 Lonicera japonica HOM05D001503 ORTHO05D004525 1.3e-26 122.9 104 67.3
CsaV3_6G000070 Cucumis sativus L. HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 65.4
Peaxi162Scf00164g00520 Petunia axillaris HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 66.3
Rhsim02G0001500 Rhododendron simsii HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 66.3
Solyc12g099100.2 Solanum lycopersicum HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 66.3
Sopen12g033810 Solanum pennellii HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 66.3
PGSC0003DMG400004608 Solanum tuberosum HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 66.3
TWI09G0619 Tripterygium wilfordii HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 64.4
TWI53G0927 Tripterygium wilfordii HOM05D001503 ORTHO05D004525 1.7e-26 122.5 104 64.4
CANSAT78G0220 Cannabis sativa HOM05D001503 ORTHO05D004525 2.2e-26 122.1 104 65.4
CAN.G484.79 Capsicum annuum HOM05D001503 ORTHO05D004525 2.2e-26 122.1 104 66.3
SGA_v2.0_scaffold123G33409 Striga asiatica HOM05D001503 ORTHO05D004525 2.2e-26 122.1 104 66.3
TAR365G0248 Trochodendron aralioides HOM05D001503 ORTHO05D004525 2.2e-26 122.1 104 66.3
Actinidia02514 Actinidia chinensis HOM05D001503 ORTHO05D004525 2.8e-26 121.7 104 66.3
Ah.07g203870 Amaranthus hybridus HOM05D001503 ORTHO05D004525 2.8e-26 121.7 104 66.3
CSS0023274 Camellia sinensis var. sinensis HOM05D001503 ORTHO05D004525 2.8e-26 121.7 104 66.3
Dinv17913 Davidia involucrata HOM05D001503 ORTHO05D004525 3.7e-26 121.3 104 65.4
Dinv29547 Davidia involucrata HOM05D001503 ORTHO05D004525 3.7e-26 121.3 104 66.3
Rhsim04G0244400 Rhododendron simsii HOM05D001503 ORTHO05D004525 3.7e-26 121.3 104 66.3
Migut.G00020 Erythranthe guttata HOM05D001503 ORTHO05D004525 4.8e-26 120.9 104 65.4
Migut.G00021 Erythranthe guttata HOM05D001503 ORTHO05D004525 4.8e-26 120.9 104 65.4
Nitab4.5_0000745g0180 Nicotiana tabacum HOM05D001503 ORTHO05D004525 4.8e-26 120.9 104 65.4
Nitab4.5_0008312g0030 Nicotiana tabacum HOM05D001503 ORTHO05D004525 4.8e-26 120.9 104 65.4
Ah.07g203830 Amaranthus hybridus HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 66.3
Cc03_g00430 Coffea canephora HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 65.4
MBI19_g32705_MAGBIO Magnolia biondii HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 63.5
Nitab4.5_0000895g0100 Nicotiana tabacum HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 66.3
Oeu014218.2 Olea europaea HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 65.4
Oeu033618.1 Olea europaea HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 65.4
Potri.010G151400 Populus trichocarpa HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 65.4
HPP92_015251 Vanilla planifolia HOM05D001503 ORTHO05D004525 6.3e-26 120.6 104 64.4
ATR0585G044 Amborella trichopoda HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 64.4
ATR0749G054 Amborella trichopoda HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 64.4
FvH4_4g20900 Fragaria vesca HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 65.4
FAN07G2065 Fragaria x ananassa HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 65.4
FAN12G2723 Fragaria x ananassa HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 65.4
MBI18_g36462_MAGBIO Magnolia biondii HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 63.5
Nn5g27155 Nelumbo nucifera HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 65.4
PSO210G4474 Papaver somniferum HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 66.3
PSO761G0396 Papaver somniferum HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 66.3
RcHm_v2.0_Chr4g0426331 Rosa chinensis HOM05D001503 ORTHO05D004525 8.3e-26 120.2 104 65.4
CAN.G305.51 Capsicum annuum HOM05D001503 ORTHO05D004525 1.1e-25 119.8 104 64.4
AUR62002588 Chenopodium quinoa HOM05D001503 ORTHO05D004525 1.1e-25 119.8 104 66.3
FAN17G2526 Fragaria x ananassa HOM05D001503 ORTHO05D004525 1.1e-25 119.8 104 64.4
Manes.03G209100 Manihot esculenta HOM05D001503 ORTHO05D004525 1.1e-25 119.8 104 62.5
Oeu052153.1 Olea europaea HOM05D001503 ORTHO05D004525 1.1e-25 119.8 104 64.4
Sc06g0007560 Simmondsia chinensis HOM05D001503 ORTHO05D004525 1.1e-25 119.8 104 64.4
AUR62030011 Chenopodium quinoa HOM05D001503 ORTHO05D004525 1.4e-25 119.4 104 66.3
Migut.N00020 Erythranthe guttata HOM05D001503 ORTHO05D004525 1.4e-25 119.4 104 65.4
Hma1.2p1_0013F.1_g008130 Hydrangea macrophylla HOM05D001503 ORTHO05D004525 1.4e-25 119.4 104 64.4
CDE05G0849 Ceratophyllum demersum HOM05D001503 ORTHO05D004525 1.8e-25 119.0 104 63.5
vmacro07980 Vaccinium macrocarpon HOM05D001503 ORTHO05D004525 1.8e-25 119.0 104 65.4
DCAR_026965 Daucus carota HOM05D001503 ORTHO05D004525 2.4e-25 118.6 104 65.4
DCAR_026968 Daucus carota HOM05D001503 ORTHO05D004525 2.4e-25 118.6 104 65.4
MSTRG.21750 Avicennia marina HOM05D001503 ORTHO05D004525 3.1e-25 118.2 104 65.4
unitig_22.g6349 Utricularia gibba HOM05D001503 ORTHO05D004525 3.1e-25 118.2 104 64.4
HanXRQChr11g0353961 Helianthus annuus HOM05D001503 ORTHO05D004525 4.1e-25 117.9 104 62.5
unitig_8.g3101 Utricularia gibba HOM05D001503 ORTHO05D004525 4.1e-25 117.9 104 64.4
SalBow5G3375 Salvia bowleyana HOM05D001503 ORTHO05D004525 5.3e-25 117.5 104 64.4
HPP92_018273 Vanilla planifolia HOM05D001503 ORTHO05D004525 5.3e-25 117.5 104 61.5
Lsat_1_v5_gn_1_40281 Lactuca sativa HOM05D001503 ORTHO05D004525 7.0e-25 117.1 104 61.5
Aqoxy2G02579 Aquilegia oxysepala HOM05D001503 ORTHO05D004525 1.6e-24 115.9 105 60.0
Pp3c17_14660 Physcomitrium patens HOM05D001503 ORTHO05D004525 4.5e-24 114.4 104 60.6
Potri.008G100800 Populus trichocarpa HOM05D001503 ORTHO05D004525 7.7e-24 113.6 104 63.5
Sabra08G0076200 Salix brachista HOM05D001503 ORTHO05D004525 1.0e-23 113.2 104 63.5
ECA233G2463 Erigeron canadensis HOM05D001503 ORTHO05D004525 1.7e-23 112.5 104 59.6
ECA233G4399 Erigeron canadensis HOM05D001503 ORTHO05D004525 2.9e-23 111.7 104 59.6
Mapoly0047s0028 Marchantia polymorpha HOM05D001503 ORTHO05D004525 2.9e-23 111.7 104 58.7
DCAR_002529 Daucus carota HOM05D001503 ORTHO05D004525 3.8e-23 111.3 104 60.6
HanXRQChr09g0251531 Helianthus annuus HOM05D001503 ORTHO05D004525 8.5e-23 110.2 104 57.7
Lsat_1_v5_gn_6_69280 Lactuca sativa HOM05D001503 ORTHO05D004525 8.5e-23 110.2 104 58.7
AagrBONN_evm.TU.Sc2ySwM_117.3096 Anthoceros agrestis HOM05D001503 ORTHO05D004525 1.5e-22 109.4 104 56.7
HanXRQChr13g0389921 Helianthus annuus HOM05D001503 ORTHO05D004525 2.5e-22 108.6 104 58.7
CBR_g32221 Chara braunii HOM05D001503 ORTHO05D004525 3.2e-22 108.2 104 58.7
SEGI_05331 Sequoiadendron giganteum HOM05D001503 ORTHO05D004525 5.5e-22 107.5 104 56.7
SHI00083 Sapria himalayana HOM05D001503 ORTHO05D004525 9.4e-22 106.7 104 57.7
Sabra10G0116600 Salix brachista HOM05D001503 ORTHO05D004525 1.2e-21 106.3 104 62.5
GSVIVG01017638001 Vitis vinifera HOM05D001503 ORTHO05D004525 1.2e-21 106.3 94 64.9
SMO236G0052 Selaginella moellendorffii HOM05D001503 ORTHO05D004525 1.6e-21 105.9 104 56.7
Hund12239 Selenicereus undatus HOM05D001503 ORTHO05D004525 1.6e-21 105.9 96 63.5
arahy.Tifrunner.gnm1.ann1.H753U7 Arachis hypogaea HOM05D001503 ORTHO05D019807 2.7e-21 105.1 104 56.7
CBR_g50308 Chara braunii HOM05D001503 ORTHO05D004525 2.7e-21 105.1 104 56.7
Os01g0328700 Oryza sativa ssp. japonica HOM05D001503 ORTHO05D004525 6.1e-21 104.0 104 56.7
Zm00001eb131070 Zea mays HOM05D001503 ORTHO05D004525 1.4e-20 102.8 104 53.8
Zm00001eb340590 Zea mays HOM05D001503 ORTHO05D004525 2.3e-20 102.1 104 53.8
arahy.Tifrunner.gnm1.ann1.4YDI7F Arachis hypogaea HOM05D001503 ORTHO05D004525 6.8e-20 100.5 104 56.7
Hund12235 Selenicereus undatus HOM05D001503 ORTHO05D004525 2.8e-18 95.1 96 59.4
CDE11G0457 Ceratophyllum demersum HOM05D001503 ORTHO05D004525 3.1e-17 91.7 91 59.3
BolC5t33658H Brassica oleracea HOM05D001503 ORTHO05D019807 5.4e-17 90.9 50 94.0
MCO02G475 Micromonas commoda HOM05D001503 ORTHO05D004525 1.2e-16 89.7 108 49.1
Cfa024911 Carpinus fangiana HOM05D001503 ORTHO05D004525 1.6e-16 89.4 102 47.1
Cre18.g749847 Chlamydomonas reinhardtii HOM05D001503 ORTHO05D004525 1.6e-16 89.4 105 49.5
BraA05t22079Z Brassica rapa HOM05D001503 ORTHO05D019807 5.0e-15 84.3 40 100.0
Haze_26572 Corylus avellana HOM05D001503 ORTHO05D004525 1.9e-14 82.4 97 47.4
PRCOL_00006115 Prasinoderma coloniale HOM05D001503 ORTHO05D004525 9.5e-14 80.1 103 45.6
Os05g0160000 Oryza sativa ssp. japonica HOM05D001503 ORTHO05D019807 3.7e-10 68.2 50 70.0
Actinidia18485 Actinidia chinensis HOM05D001503 ORTHO05D054702 5.4e-09 64.3 85 48.2
CAN.G484.112 Capsicum annuum HOM05D001503 ORTHO05D004525 9.2e-09 63.5 49 71.4
Actinidia28297 Actinidia chinensis HOM05D001503 ORTHO05D053223 1.2e-08 63.2 85 47.1
CAN.G484.102 Capsicum annuum HOM05D008667 ORTHO05D010850 1.2e-08 63.2 81 49.4
Aqoxy144s007 Aquilegia oxysepala HOM05D001503 ORTHO05D004525 3.5e-08 61.6 95 37.9
vmacro15163 Vaccinium macrocarpon HOM05D001503 ORTHO05D004525 6.6e-07 57.4 33 81.8


User provided reference genes

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