Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 3.8e-140 501.5 254 100.0
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 1.9e-139 499.2 254 99.2
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 9.3e-139 496.9 254 98.8
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 9.3e-139 496.9 254 98.8
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 9.3e-139 496.9 254 98.8
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 9.9e-133 476.9 254 94.9
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.7e-132 476.1 254 94.5
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.7e-132 476.1 254 94.5
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 2.4e-131 472.2 254 92.1
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 4.2e-131 471.5 254 93.7
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 5.4e-131 471.1 254 93.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 5.4e-131 471.1 254 93.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 5.4e-131 471.1 254 93.3
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 3.9e-129 464.9 254 90.6
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 8.7e-129 463.8 254 90.9
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 5.6e-128 461.1 254 90.9
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 6.4e-124 447.6 254 88.6
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 7.6e-117 424.1 246 85.4
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.9e-115 419.5 236 87.7
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 1.5e-96 356.7 246 68.7
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 2.2e-95 352.8 246 69.1
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 2.4e-94 349.4 256 68.8
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 3.1e-94 349.0 251 69.3
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 1.2e-93 347.1 252 67.9
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 1.2e-90 337.0 247 66.0
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 2.1e-90 336.3 247 66.0
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 6.1e-90 334.7 247 66.4
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 1.8e-89 333.2 252 64.3
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.3e-89 332.8 254 68.5
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 2.3e-89 332.8 244 68.4
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 2.3e-89 332.8 247 68.4
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 3.0e-89 332.4 254 68.1
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 1.5e-88 330.1 286 60.5
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 1.7e-87 326.6 244 66.8
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 2.2e-87 326.2 248 66.1
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 2.2e-87 326.2 244 66.8
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 8.2e-87 324.3 244 66.4
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 1.4e-86 323.6 248 66.5
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 2.6e-85 319.3 246 67.5
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 3.5e-85 318.9 248 66.9
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 1.3e-84 317.0 247 64.4
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 1.7e-84 316.6 251 64.1
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.7e-84 316.6 236 69.9
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 3.8e-84 315.5 252 63.9
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 3.8e-84 315.5 252 63.9
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 5.0e-84 315.1 248 66.5
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 6.5e-84 314.7 243 63.8
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 1.5e-83 313.5 243 63.4
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 9.4e-83 310.8 251 61.8
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 2.1e-82 309.7 244 63.1
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 2.7e-82 309.3 236 64.8
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 8.0e-82 307.8 253 63.2
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 1.0e-81 307.4 244 62.7
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 3.0e-81 305.8 242 62.4
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 3.0e-81 305.8 239 64.0
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 4.0e-81 305.4 237 63.3
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 5.2e-81 305.1 252 60.3
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 6.7e-81 304.7 253 64.0
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 6.7e-81 304.7 249 63.5
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 3.3e-80 302.4 251 61.0
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 3.3e-80 302.4 236 66.9
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 4.4e-80 302.0 246 60.6
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 4.4e-80 302.0 256 61.3
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 9.7e-80 300.8 245 61.2
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 1.7e-79 300.1 241 63.1
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 2.2e-79 299.7 243 62.6
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 2.2e-79 299.7 243 62.6
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 2.8e-79 299.3 248 61.7
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 3.7e-79 298.9 240 63.3
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 4.8e-79 298.5 249 63.1
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 1.1e-78 297.4 249 62.7
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 1.4e-78 297.0 248 60.9
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 1.8e-78 296.6 237 63.7
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 5.3e-78 295.0 242 62.4
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 5.3e-78 295.0 247 60.7
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 5.3e-78 295.0 245 60.8
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 9.1e-78 294.3 248 60.9
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 2.0e-77 293.1 249 60.6
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 2.0e-77 293.1 243 60.9
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 3.5e-77 292.4 242 61.6
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 4.5e-77 292.0 249 60.6
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 7.7e-77 291.2 244 60.2
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.0e-76 290.8 254 59.4
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 2.2e-76 289.7 256 59.0
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 2.7e-74 282.7 242 62.0
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 8.0e-74 281.2 242 58.3
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 1.7e-71 273.5 248 58.5
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 2.2e-71 273.1 220 60.9
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 1.4e-70 270.4 191 67.5
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 1.8e-70 270.0 237 59.9
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 2.4e-70 269.6 254 55.5
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 2.0e-69 266.5 240 58.3
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 2.7e-69 266.2 236 59.3
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 7.7e-69 264.6 239 57.3
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 1.3e-68 263.8 247 55.5
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 1.9e-67 260.0 234 57.7
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 4.2e-67 258.8 239 58.2
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 9.4e-67 257.7 239 56.1
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 2.1e-66 256.5 241 56.8
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 6.1e-66 255.0 236 57.6
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 2.3e-65 253.1 236 57.6
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 1.5e-64 250.4 236 54.2
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 2.6e-64 249.6 190 64.2
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.7e-63 246.9 236 56.8
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 3.1e-62 242.7 236 52.5
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 9.2e-62 241.1 240 55.0
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 2.7e-61 239.6 314 45.2
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 1.0e-60 237.7 190 63.7
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 6.6e-60 235.0 207 59.9
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 1.2e-56 224.2 232 51.3
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 7.5e-56 221.5 190 61.1
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 1.2e-53 214.2 240 47.1
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 6.6e-52 208.4 254 48.4
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 2.2e-47 193.4 166 60.8
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 8.3e-47 191.4 221 48.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.0e-45 185.3 146 66.4
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 2.5e-43 179.9 234 40.2
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 4.3e-43 179.1 160 56.2
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 2.8e-42 176.4 139 66.2
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 5.2e-41 172.2 132 64.4
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 7.8e-37 158.3 131 61.1
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 9.9e-32 141.4 78 92.3
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 2.2e-31 140.2 129 63.6
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 3.1e-25 119.8 228 31.6
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.5e-24 117.5 230 33.0
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 2.4e-22 110.2 60 88.3
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 4.2e-22 109.4 78 69.2
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.0e-20 104.8 78 66.7
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 3.4e-16 89.7 79 53.2
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 4.9e-15 85.9 47 89.4
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 8.4e-15 85.1 64 70.3
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 2.7e-13 80.1 46 84.8
C02p21590 Brassica napus HOM05D000230 ORTHO05D000176 3.2e-06 56.6 30 86.7
C08p53840 Brassica napus HOM05D000230 ORTHO05D000176 3.2e-06 56.6 30 86.7


User provided reference genes

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