Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1709.1 844 100.0
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 0.0e+00 1696.0 844 99.2
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 0.0e+00 1620.5 844 95.6
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1539.6 845 91.5
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 0.0e+00 1317.0 867 77.6
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 0.0e+00 1187.6 864 71.8
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 0.0e+00 1125.9 870 66.7
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1111.7 844 70.7
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 0.0e+00 1083.2 870 64.8
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.7e-309 1065.8 869 64.6
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 5.9e-307 1057.4 875 65.3
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 2.9e-290 1001.9 875 61.8
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.3e-274 949.1 733 67.9
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.1e-219 765.0 893 49.3
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.7e-174 616.7 905 41.7
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.3e-173 614.4 888 41.4
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 4.3e-172 609.4 897 41.8
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 7.3e-172 608.6 888 41.1
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 5.2e-170 602.4 907 40.4
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.9e-168 595.9 881 40.4
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.3e-164 583.2 899 41.2
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.3e-160 571.2 913 40.9
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 2.4e-159 567.0 899 41.2
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 5.4e-159 565.8 878 39.9
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.7e-158 563.5 889 39.8
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.5e-156 557.8 887 40.7
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 2.1e-155 553.9 892 39.5
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 4.7e-155 552.7 923 38.5
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.2e-155 552.4 923 38.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 6.8e-154 548.9 887 41.0
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 8.9e-154 548.5 925 38.4
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 8.9e-154 548.5 924 38.6
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.9e-151 540.8 847 40.0
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 9.2e-151 538.5 897 38.8
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 9.2e-151 538.5 774 41.9
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.6e-150 536.2 923 38.7
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 7.8e-150 535.4 884 37.3
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 3.9e-149 533.1 887 39.3
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 6.6e-149 532.3 888 39.6
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.9e-148 530.8 335 80.0
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 2.5e-148 530.4 888 36.8
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.8e-146 524.2 886 39.2
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 8.4e-144 515.4 721 41.9
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 9.6e-140 501.9 885 37.6
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.6e-139 501.1 892 36.2
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 6.9e-138 495.7 880 36.5
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 2.6e-137 493.8 770 39.5
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 4.4e-137 493.0 896 36.0
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 4.4e-137 493.0 897 35.9
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 5.4e-135 486.1 892 35.4
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 3.5e-134 483.4 885 35.5
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 5.1e-133 479.6 866 37.2
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 6.6e-133 479.2 863 35.3
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.8e-131 473.8 774 39.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.4e-130 471.5 820 37.6
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.1e-130 470.3 925 35.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 4.0e-130 469.9 801 37.3
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 4.0e-130 469.9 861 35.1
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 2.0e-129 467.6 880 35.0
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.2e-127 460.3 782 37.2
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.8e-125 454.5 880 36.2
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 5.1e-125 453.0 883 34.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 4.8e-123 446.4 898 33.6
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 8.1e-123 445.7 835 35.1
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.4e-121 440.3 885 34.6
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 9.9e-121 438.7 895 32.8
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.9e-120 436.4 870 34.4
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 8.4e-120 435.6 278 80.9
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 8.4e-120 435.6 916 33.4
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 4.2e-119 433.3 852 32.9
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.0e-117 427.2 731 40.1
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 3.4e-113 413.7 844 32.7
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.7e-112 411.4 909 34.1
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.7e-112 411.4 885 32.3
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.9e-112 410.6 815 33.6
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.9e-112 410.6 908 32.2
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 9.3e-111 405.6 767 33.9
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 7.9e-110 402.5 904 31.7
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.3e-108 397.1 900 31.2
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 7.4e-108 396.0 563 40.9
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.8e-107 394.0 860 33.1
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 3.7e-107 393.7 282 70.9
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 3.7e-107 393.7 282 70.9
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.1e-106 392.1 861 31.2
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.1e-106 392.1 867 31.7
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.0e-101 374.0 891 30.4
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.5e-100 371.7 937 30.8
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 2.5e-100 370.9 238 79.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.8e-99 366.7 892 31.7
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 3.8e-96 357.1 753 35.1
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 6.5e-96 356.3 882 31.7
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 7.2e-95 352.8 192 90.1
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 7.2e-95 352.8 905 31.2
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 9.4e-95 352.4 853 31.5
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.0e-93 349.0 905 31.0
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.6e-89 334.3 883 31.1
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.1e-86 324.7 865 28.8
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.7e-86 323.6 820 31.1
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 5.2e-85 320.1 923 29.8
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.0e-84 318.2 898 29.5
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 2.0e-81 308.1 811 30.5
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 5.0e-80 303.5 435 43.4
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.0e-77 295.8 579 34.5
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-74 285.8 763 31.5
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.2e-70 272.3 632 31.8
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.1e-63 249.2 633 30.5
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.5e-63 248.8 919 26.6
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 2.5e-63 248.1 498 32.9
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.2e-60 239.2 293 46.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 4.4e-60 237.3 875 27.8
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 5.7e-60 236.9 916 26.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.1e-58 230.7 838 27.7
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 5.7e-52 210.3 383 35.8
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.0e-49 201.8 800 25.4
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.5e-44 185.7 513 29.6
BcaB06g25878 Brassica carinata HOM05D004345 ORTHO05D005192 4.4e-44 184.1 106 85.8
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.9e-43 180.6 613 26.8
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.0e-42 176.8 450 30.0
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.1e-38 165.2 500 28.2
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.1e-37 161.4 651 26.0
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.2e-36 159.5 405 30.4
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 6.0e-33 147.1 326 32.5
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 1.1e-29 136.3 351 31.1
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 1.8e-29 135.6 74 87.8
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.4e-28 131.3 442 28.1
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.9e-27 128.3 202 38.6
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-26 126.3 323 30.7
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 8.7e-24 116.7 60 90.0
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.5e-23 115.9 181 39.8
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.3e-23 114.8 592 23.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 9.6e-23 113.2 477 24.3
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.6e-22 112.5 416 28.4
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-16 92.4 356 27.5
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 6.6e-16 90.5 168 42.3
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.5e-15 89.4 380 25.3
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.3e-15 88.2 380 25.0
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 4.0e-13 81.3 450 21.1
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-12 77.8 220 30.5
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 2.2e-11 75.5 302 25.2
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.1e-10 73.2 96 40.6
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 5.4e-10 70.9 110 39.1
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.7e-08 63.9 127 33.9
BolC5t33471H Brassica oleracea HOM05D004345 ORTHO05D005192 3.3e-07 61.6 81 51.9


User provided reference genes

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