Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1172.9 690 100.0
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1172.9 690 100.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1155.6 691 93.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1154.8 691 94.5
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1153.3 691 94.4
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1130.5 690 94.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1130.5 693 94.8
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1129.0 693 94.7
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1129.0 693 92.9
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1127.5 690 94.8
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 0.0e+00 1120.5 691 93.9
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1116.7 692 93.9
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 0.0e+00 1116.3 692 89.7
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 0.0e+00 1112.1 690 88.7
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 0.0e+00 1106.7 692 91.5
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1100.5 723 89.9
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 0.0e+00 1100.1 694 90.9
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 0.0e+00 1099.3 691 88.0
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 0.0e+00 1082.4 693 87.0
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.6e-300 1035.0 691 83.4
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 9.8e-284 979.9 690 79.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 5.4e-282 974.2 690 78.7
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.9e-280 968.4 690 78.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.8e-280 968.0 690 78.1
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-279 966.1 690 76.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.3e-279 964.9 690 76.2
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 5.6e-279 964.1 690 78.6
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 7.3e-279 963.8 690 77.8
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.6e-278 962.6 690 77.0
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.1e-277 958.4 687 78.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.2e-276 956.4 694 78.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 4.4e-276 954.5 690 78.0
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 5.8e-276 954.1 690 77.0
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.4e-274 949.5 690 76.5
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.4e-274 949.5 693 75.9
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 9.2e-274 946.8 694 78.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 2.0e-273 945.7 684 77.8
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-273 945.3 689 78.1
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 4.6e-273 944.5 687 78.6
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 7.8e-273 943.7 672 76.6
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.0e-272 943.3 687 78.5
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.7e-272 942.6 688 77.0
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 8.6e-272 940.3 690 77.2
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 8.6e-272 940.3 690 77.1
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 3.3e-271 938.3 687 76.6
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 5.6e-271 937.6 690 77.0
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 1.2e-270 936.4 687 75.3
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.8e-270 935.3 690 74.8
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 4.0e-269 931.4 690 74.2
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.2e-269 931.0 690 74.5
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 6.8e-269 930.6 690 76.1
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 8.9e-269 930.2 691 73.2
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.8e-268 927.5 690 74.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.3e-267 926.4 687 75.7
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.7e-267 924.9 672 76.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 4.9e-267 924.5 660 78.5
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 8.3e-267 923.7 690 76.4
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.1e-266 923.3 686 77.7
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.4e-266 922.9 656 76.2
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.4e-266 922.2 687 77.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.4e-266 922.2 687 75.4
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 5.4e-266 921.0 686 74.5
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.6e-265 919.5 749 68.5
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 3.5e-265 918.3 669 74.1
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.5e-265 918.3 749 68.5
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.6e-265 917.9 690 73.8
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 4.6e-265 917.9 691 71.9
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 6.0e-265 917.5 687 77.4
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 7.8e-265 917.1 692 74.6
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 6.6e-264 914.1 693 73.0
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 6.6e-264 914.1 691 76.0
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 7.3e-263 910.6 734 71.0
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.2e-262 909.8 685 75.0
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.2e-262 909.8 652 75.6
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 6.2e-262 907.5 675 73.0
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.4e-261 906.4 690 73.9
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-261 905.6 734 70.6
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 4.0e-261 904.8 675 73.2
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 5.2e-261 904.4 693 75.3
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 5.2e-261 904.4 692 73.3
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.2e-259 899.0 684 73.8
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-257 892.1 736 70.2
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 4.6e-257 891.3 670 73.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 5.6e-255 884.4 690 74.6
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 3.6e-254 881.7 687 78.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 8.9e-253 877.1 656 75.5
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.4e-250 869.0 689 70.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 6.0e-249 864.4 686 71.4
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 7.8e-249 864.0 675 72.9
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 5.1e-248 861.3 690 71.2
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 8.7e-248 860.5 686 69.7
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 9.6e-247 857.1 642 76.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 6.9e-245 850.9 681 68.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.5e-244 849.7 674 71.4
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.5e-244 849.7 676 71.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 6.4e-243 844.3 676 71.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 3.5e-241 838.6 681 69.3
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.4e-237 825.9 737 64.5
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.1e-237 825.5 614 77.5
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.9e-234 816.2 648 70.7
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 5.4e-234 814.7 621 74.1
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 7.9e-233 810.8 676 67.6
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.9e-233 810.8 670 68.2
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.1e-231 807.0 1040 50.2
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.5e-231 805.8 725 63.9
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.6e-230 803.1 719 64.7
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.2e-228 797.0 655 68.7
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 2.9e-227 792.3 579 75.3
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.8e-224 783.1 658 67.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.1e-223 780.4 670 66.6
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.5e-223 779.2 691 64.8
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.6e-223 778.1 695 64.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 3.4e-204 715.7 677 61.2
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 6.5e-203 711.4 704 62.4
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 6.7e-200 701.4 658 60.0
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 9.7e-199 697.6 556 73.0
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.6e-193 680.2 650 61.8
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.1e-193 679.9 671 57.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 4.9e-158 562.4 687 51.4
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.1e-152 544.7 427 75.4
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 8.1e-145 518.5 403 74.2
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.9e-135 485.0 364 72.0
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.2e-125 453.0 343 68.8
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 7.1e-125 452.2 577 50.8
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 4.3e-98 363.2 367 61.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.6e-82 310.8 504 43.8
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.1e-80 303.9 723 33.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 7.0e-80 302.8 511 43.4
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.7e-76 290.0 278 61.2
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.0e-46 192.6 185 61.1
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.3e-46 192.2 566 32.3
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 5.0e-46 190.3 130 74.6
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.5e-45 186.0 156 67.3
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.6e-44 184.1 130 74.6
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.7e-38 165.2 94 86.2
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 3.9e-38 164.1 780 28.1
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 4.4e-34 150.6 622 28.6
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.7e-28 130.6 90 77.8
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.0e-22 111.3 672 21.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.1e-19 101.3 71 76.1
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 6.6e-14 83.6 105 60.0
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.5e-13 81.6 687 21.5
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.2e-10 72.8 76 52.6
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.0e-10 72.0 70 57.1
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 9.9e-10 69.7 778 18.6
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 4.2e-08 64.3 58 63.8
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.7e-07 61.6 78 52.6
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 5.1e-06 57.4 78 52.6


User provided reference genes

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