Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p31090 Brassica napus HOM05D001004 ORTHO05D000653 9.3e-26 119.4 59 100.0
BraA05t21950Z Brassica rapa HOM05D001004 ORTHO05D000653 9.3e-26 119.4 59 100.0
BolC3t14835H Brassica oleracea HOM05D001004 ORTHO05D000653 6.5e-19 96.7 59 79.7
AT3G46860 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 9.1e-13 76.3 60 58.3
Thhalv10011055m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 3.4e-12 74.3 60 61.7
Carub.0003s2826 Capsella rubella HOM05D001004 ORTHO05D000653 1.3e-11 72.4 60 58.3
Gohir.A05G281850 Gossypium hirsutum HOM05D001004 ORTHO05D000653 6.5e-11 70.1 60 56.7
Duzib114G0002 Durio zibethinus HOM05D001004 ORTHO05D000653 1.1e-10 69.3 60 53.3
Gohir.A05G281700 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.5e-10 68.2 60 55.0
Gorai.009G297300 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.5e-10 68.2 60 55.0
Gohir.D05G283088 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.2e-10 67.8 60 55.0
Gorai.009G297200 Gossypium raimondii HOM05D001004 ORTHO05D000653 3.2e-10 67.8 60 55.0
Gorai.009G297400 Gossypium raimondii HOM05D001004 ORTHO05D000653 3.2e-10 67.8 60 55.0
Gohir.A05G281800 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.5e-10 67.0 60 55.0
CARHR155430 Cardamine hirsuta HOM05D001004 ORTHO05D000653 7.2e-10 66.6 60 50.0
Nn1g02639 Nelumbo nucifera HOM05D001004 ORTHO05D000653 1.6e-09 65.5 60 56.7
TAR376G0093 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.1e-09 65.1 60 48.3
COL.COLO4_35913 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.7e-09 64.7 60 48.3
Haze_10651 Corylus avellana HOM05D001004 ORTHO05D000653 4.7e-09 63.9 56 51.8
Eucgr.B01872 Eucalyptus grandis HOM05D001004 ORTHO05D000653 4.7e-09 63.9 61 50.8
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 4.7e-09 63.9 60 56.7
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 4.7e-09 63.9 60 56.7
MD15G1392900 Malus domestica HOM05D001004 ORTHO05D000653 4.7e-09 63.9 60 50.0
COL.COLO4_12153 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.0e-08 62.8 61 54.1
Manes.05G086390 Manihot esculenta HOM05D001004 ORTHO05D000653 2.3e-08 61.6 63 52.4
Nn3g18474 Nelumbo nucifera HOM05D001004 ORTHO05D000653 2.3e-08 61.6 59 52.5
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 2.3e-08 61.6 60 51.7
COL.COLO4_12152 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.0e-08 61.2 61 54.1
Eucgr.H05147 Eucalyptus grandis HOM05D001004 ORTHO05D000653 3.0e-08 61.2 61 47.5
ClCG02G012910 Citrullus lanatus HOM05D001004 ORTHO05D000653 3.9e-08 60.8 60 50.0
Cc07_g18340 Coffea canephora HOM05D001004 ORTHO05D000653 3.9e-08 60.8 59 49.2
MELO3C000685.2 Cucumis melo HOM05D001004 ORTHO05D000653 3.9e-08 60.8 60 48.3
Migut.A00977 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.9e-08 60.8 60 53.3
Eucgr.F04168 Eucalyptus grandis HOM05D001004 ORTHO05D000653 3.9e-08 60.8 61 49.2
Gohir.A11G128400 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.9e-08 60.8 60 55.0
Cfa005539 Carpinus fangiana HOM05D001004 ORTHO05D000653 5.1e-08 60.5 60 45.0
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 5.1e-08 60.5 60 50.0
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 5.1e-08 60.5 60 50.0
COL.COLO4_20741 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.7e-08 60.1 60 46.7
COL.COLO4_38468 Corchorus olitorius HOM05D001004 ORTHO05D000653 8.8e-08 59.7 59 49.2
Eucgr.B01966 Eucalyptus grandis HOM05D001004 ORTHO05D000653 8.8e-08 59.7 61 49.2
Manes.05G086408 Manihot esculenta HOM05D001004 ORTHO05D000653 8.8e-08 59.7 63 50.8
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 8.8e-08 59.7 60 50.0
QL06p015886 Quercus lobata HOM05D001004 ORTHO05D000653 8.8e-08 59.7 59 50.8
Manes.05G086462 Manihot esculenta HOM05D001004 ORTHO05D000653 1.1e-07 59.3 59 49.2
TAR376G1036 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.1e-07 59.3 60 46.7
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 1.5e-07 58.9 62 50.0
PSO832G2150 Papaver somniferum HOM05D001004 ORTHO05D000653 1.5e-07 58.9 62 45.2
Migut.A00975 Erythranthe guttata HOM05D001004 ORTHO05D000653 2.0e-07 58.5 60 51.7
Eucgr.F00211 Eucalyptus grandis HOM05D001004 ORTHO05D000653 2.0e-07 58.5 60 46.7
Manes.05G086346 Manihot esculenta HOM05D001004 ORTHO05D000653 2.0e-07 58.5 60 50.0
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 2.0e-07 58.5 60 51.7
Thhalv10011127m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 2.6e-07 58.2 43 62.8
Oeu032586.1 Olea europaea HOM05D001004 ORTHO05D000653 2.6e-07 58.2 60 51.7
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.3e-07 57.8 60 51.7
MELO3C034586.2 Cucumis melo HOM05D001004 ORTHO05D000653 3.3e-07 57.8 60 46.7
Manes.05G086373 Manihot esculenta HOM05D001004 ORTHO05D000653 3.3e-07 57.8 59 45.8
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 3.3e-07 57.8 60 51.7
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 4.4e-07 57.4 60 51.7
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.4e-07 57.4 60 55.0
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 4.4e-07 57.4 60 50.0
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 5.7e-07 57.0 60 50.0
COL.COLO4_12161 Corchorus olitorius HOM05D001004 ORTHO05D000653 5.7e-07 57.0 62 45.2
Eucgr.D01653 Eucalyptus grandis HOM05D001004 ORTHO05D000653 5.7e-07 57.0 60 48.3
MBI04_g22607_MAGBIO Magnolia biondii HOM05D001004 ORTHO05D000653 5.7e-07 57.0 60 50.0
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 7.4e-07 56.6 60 51.7
MELO3C020883.2 Cucumis melo HOM05D001004 ORTHO05D000653 7.4e-07 56.6 60 46.7
Cfa010162 Carpinus fangiana HOM05D009680 ORTHO05D000653 9.7e-07 56.2 60 48.3
CsaV3_2G017000 Cucumis sativus L. HOM05D001004 ORTHO05D000653 9.7e-07 56.2 60 46.7
Migut.A00976 Erythranthe guttata HOM05D001004 ORTHO05D000653 9.7e-07 56.2 60 50.0
FAN28G2625 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.7e-07 56.2 62 51.6
Oeu017833.1 Olea europaea HOM05D001004 ORTHO05D000653 9.7e-07 56.2 61 50.8
Oeu017841.1 Olea europaea HOM05D001004 ORTHO05D000653 9.7e-07 56.2 61 49.2
Psat4g107840 Pisum sativum HOM05D001004 ORTHO05D000653 9.7e-07 56.2 60 50.0
Migut.C00655 Erythranthe guttata HOM05D009680 ORTHO05D000653 1.3e-06 55.8 58 48.3
HanXRQChr01g0005401 Helianthus annuus HOM05D001004 ORTHO05D000653 1.3e-06 55.8 59 45.8
Medtr1g075410 Medicago truncatula HOM05D001004 ORTHO05D000653 1.3e-06 55.8 60 48.3
Potri.010G075800 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.3e-06 55.8 60 46.7
TAR376G0668 Trochodendron aralioides HOM05D004967 ORTHO05D006146 1.3e-06 55.8 55 43.6
GSVIVG01018137001 Vitis vinifera HOM05D001004 ORTHO05D000653 1.3e-06 55.8 61 47.5
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.7e-06 55.5 60 48.3
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 1.7e-06 55.5 60 48.3
Migut.D01298 Erythranthe guttata HOM05D009680 ORTHO05D000653 1.7e-06 55.5 60 48.3
Eucgr.H02107 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.7e-06 55.5 60 46.7
RcHm_v2.0_Chr2g0105871 Rosa chinensis HOM05D001004 ORTHO05D000653 1.7e-06 55.5 62 50.0
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 1.7e-06 55.5 60 48.3
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 1.7e-06 55.5 60 50.0
Eucgr.C02276 Eucalyptus grandis HOM05D001004 ORTHO05D000653 2.2e-06 55.1 60 45.0
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 2.2e-06 55.1 60 48.3
COL.COLO4_12156 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.8e-06 54.7 61 50.8
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 2.8e-06 54.7 60 48.3
Potri.010G075400 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.8e-06 54.7 60 46.7
Atru.chr5.1613 Acer truncatum HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 48.3
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 53.3
Migut.L00983 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.7e-06 54.3 62 43.5
Manes.05G086331 Manihot esculenta HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 46.7
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 48.3
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 51.7
Potri.010G075600 Populus trichocarpa HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 46.7
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 51.7
TPR.G31261 Trifolium pratense HOM05D001004 ORTHO05D000653 3.7e-06 54.3 60 50.0
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 4.8e-06 53.9 60 50.0
Haze_19482 Corylus avellana HOM05D001004 ORTHO05D000653 4.8e-06 53.9 60 50.0
MD13G1208500 Malus domestica HOM05D001004 ORTHO05D000653 4.8e-06 53.9 60 48.3
Manes.05G086328 Manihot esculenta HOM05D001004 ORTHO05D000653 4.8e-06 53.9 60 46.7
Nn1g09270 Nelumbo nucifera HOM05D008628 ORTHO05D000653 4.8e-06 53.9 61 45.9
Potri.010G075300 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.8e-06 53.9 60 50.0
Potri.010G075501 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.8e-06 53.9 60 50.0
GSVIVG01018139001 Vitis vinifera HOM05D001004 ORTHO05D000653 4.8e-06 53.9 61 45.9
Actinidia08437 Actinidia chinensis HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 48.3
CSS0031008 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 6.3e-06 53.5 58 50.0
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 51.7
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 46.7
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 45.0
Manes.05G086444 Manihot esculenta HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 46.7
Prupe.1G032700 Prunus persica HOM05D001004 ORTHO05D000653 6.3e-06 53.5 62 50.0
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 45.0
Sabra10G0033100 Salix brachista HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 50.0
Sabra10G0033300 Salix brachista HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 50.0
Sabra10G0033500 Salix brachista HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 50.0
Sed0010846 Sechium edule HOM05D001004 ORTHO05D000653 6.3e-06 53.5 61 49.2
THA.LOC104805628 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 50.0
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 6.3e-06 53.5 60 50.0
CSS0013364 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 50.0
AUR62006914 Chenopodium quinoa HOM05D008628 ORTHO05D010443 8.2e-06 53.1 57 50.9
AUR62032222 Chenopodium quinoa HOM05D001004 ORTHO05D000653 8.2e-06 53.1 59 47.5
DCAR_024231 Daucus carota HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 50.0
Duzib114G0743 Durio zibethinus HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 51.7
Eucgr.I00166 Eucalyptus grandis HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 48.3
Eucgr.I00167 Eucalyptus grandis HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 48.3
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 50.0
FvH4_4g02930 Fragaria vesca HOM05D001004 ORTHO05D000653 8.2e-06 53.1 62 50.0
FAN12G3874 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.2e-06 53.1 62 50.0
FAN12G4224 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.2e-06 53.1 62 50.0
HanXRQChr01g0014521 Helianthus annuus HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 46.7
Medtr1g075340 Medicago truncatula HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 46.7
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 46.7
Potri.010G075200 Populus trichocarpa HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 46.7
RcHm_v2.0_Chr4g0390971 Rosa chinensis HOM05D001004 ORTHO05D000653 8.2e-06 53.1 62 50.0
SalBow6G6111 Salvia bowleyana HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 46.7
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 8.2e-06 53.1 60 46.7


User provided reference genes

Program Settings