Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p30720 Brassica napus HOM05D012125 ORTHO05D001295 5.9e-52 207.2 102 100.0
BraA05t21913Z Brassica rapa HOM05D012125 ORTHO05D001295 1.3e-51 206.1 102 99.0
BcaC05g28563 Brassica carinata HOM05D012125 ORTHO05D001295 6.5e-51 203.8 102 97.1
C05p46600 Brassica napus HOM05D012125 ORTHO05D001295 6.5e-51 203.8 102 97.1
BolC5t33388H Brassica oleracea HOM05D012125 ORTHO05D001295 6.5e-51 203.8 102 97.1
BcaB04g20741 Brassica carinata HOM05D012125 ORTHO05D001295 8.2e-46 186.8 102 87.3
Sp3g16940 Schrenkiella parvula HOM05D012125 ORTHO05D001295 1.4e-45 186.0 102 87.3
Thhalv10021820m.g Eutrema salsugineum HOM05D012125 ORTHO05D001295 2.4e-45 185.3 102 87.3
BcaC01g03671 Brassica carinata HOM05D012125 ORTHO05D001295 4.5e-44 181.0 102 85.3
BolC3t17276H Brassica oleracea HOM05D012125 ORTHO05D001295 4.5e-44 181.0 102 85.3
C03p49810 Brassica napus HOM05D012125 ORTHO05D001295 2.2e-43 178.7 102 84.3
BcaB06g25938 Brassica carinata HOM05D012125 ORTHO05D001295 8.5e-43 176.8 104 86.5
Carub.0003s1868 Capsella rubella HOM05D012125 ORTHO05D001295 4.1e-37 157.9 103 73.8
CARHR094290 Cardamine hirsuta HOM05D012125 ORTHO05D001295 2.7e-36 155.2 106 72.6
BcaNung06097 Brassica carinata HOM05D012125 ORTHO05D001295 6.1e-33 144.1 102 72.5
Aa31LG8G5680 Aethionema arabicum HOM05D001848 ORTHO05D001295 7.5e-31 137.1 103 68.9
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 1.6e-12 76.3 99 44.4
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 3.0e-11 72.0 100 43.0
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 5.0e-11 71.2 108 38.0
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.1e-10 70.1 108 40.7
Carub.0008s0807 Capsella rubella HOM05D001848 ORTHO05D001295 1.9e-10 69.3 96 42.7
Rhsim05G0076600 Rhododendron simsii HOM05D001848 ORTHO05D001295 2.5e-10 68.9 100 46.0
Aqoxy2G03960 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 4.3e-10 68.2 104 40.4
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 5.6e-10 67.8 95 40.0
Manes.15G148400 Manihot esculenta HOM05D001848 ORTHO05D001295 5.6e-10 67.8 94 43.6
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 5.6e-10 67.8 105 39.0
Sc08g0000310 Simmondsia chinensis HOM05D001848 ORTHO05D001295 9.5e-10 67.0 99 41.4
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 2.1e-09 65.9 90 41.1
BcaB07g30026 Brassica carinata HOM05D001848 ORTHO05D001295 2.1e-09 65.9 82 43.9
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 2.1e-09 65.9 104 40.4
MSTRG.22559 Avicennia marina HOM05D001848 ORTHO05D001295 2.8e-09 65.5 106 38.7
Lj1g0024594 Lotus japonicus HOM05D001848 ORTHO05D001295 3.6e-09 65.1 92 40.2
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 4.7e-09 64.7 101 39.6
CiPaw.14G043500 Carya illinoinensis HOM05D001848 ORTHO05D001295 4.7e-09 64.7 102 40.2
Potri.T125404 Populus trichocarpa HOM05D001848 ORTHO05D001295 6.2e-09 64.3 108 40.7
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 8.0e-09 63.9 97 41.2
FvH4_2g17830 Fragaria vesca HOM05D001848 ORTHO05D001295 8.0e-09 63.9 103 46.6
FAN15G3178 Fragaria x ananassa HOM05D001848 ORTHO05D001295 8.0e-09 63.9 103 46.6
FAN24G1271 Fragaria x ananassa HOM05D001848 ORTHO05D001295 8.0e-09 63.9 103 46.6
Eucgr.I01246 Eucalyptus grandis HOM05D001848 ORTHO05D001295 1.1e-08 63.5 102 40.2
PSO017G5175 Papaver somniferum HOM05D001848 ORTHO05D001295 1.1e-08 63.5 95 37.9
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 1.4e-08 63.2 99 40.4
Nn1g07985 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.4e-08 63.2 104 39.4
Nn1g08247 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.4e-08 63.2 104 39.4
RcHm_v2.0_Chr6g0282861 Rosa chinensis HOM05D001848 ORTHO05D001295 1.4e-08 63.2 98 46.9
Sp2g18860 Schrenkiella parvula HOM05D001848 ORTHO05D001295 1.4e-08 63.2 100 40.0
DCAR_021416 Daucus carota HOM05D001848 ORTHO05D001295 1.8e-08 62.8 98 40.8
Potri.009G112553 Populus trichocarpa HOM05D001848 ORTHO05D001295 1.8e-08 62.8 108 39.8
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.8e-08 62.8 102 42.2
Sc17g0001760 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.8e-08 62.8 106 39.6
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 108 38.0
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 108 38.0
VMungo1383G1556 Vigna mungo HOM05D001848 ORTHO05D001295 1.8e-08 62.8 73 47.9
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 2.3e-08 62.4 101 37.6
Phvul.008G137100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 2.3e-08 62.4 74 47.3
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 2.3e-08 62.4 94 38.3
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 3.1e-08 62.0 76 44.7
Ca_20849_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 3.1e-08 62.0 100 38.0
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 3.1e-08 62.0 92 41.3
Prupe.8G103000 Prunus persica HOM05D001848 ORTHO05D001295 3.1e-08 62.0 96 41.7
QL09p046203 Quercus lobata HOM05D001848 ORTHO05D001295 3.1e-08 62.0 97 38.1
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 4.0e-08 61.6 90 37.8
DCAR_018625 Daucus carota HOM05D001848 ORTHO05D001295 4.0e-08 61.6 92 38.0
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 4.0e-08 61.6 102 36.3
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 4.0e-08 61.6 90 41.1
TWI36G0223 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 4.0e-08 61.6 100 41.0
MBI07_g13964_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 5.2e-08 61.2 98 39.8
Nn1g08244 Nelumbo nucifera HOM05D001848 ORTHO05D001295 5.2e-08 61.2 104 40.4
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 5.2e-08 61.2 108 37.0
Rhsim01G0248600 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.8e-08 60.8 102 39.2
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 8.9e-08 60.5 97 41.2
CAN.G129.19 Capsicum annuum HOM05D001848 ORTHO05D001295 8.9e-08 60.5 91 44.0
Glyma.08G344300 Glycine max HOM05D001848 ORTHO05D001295 8.9e-08 60.5 94 39.4
Lsat_1_v5_gn_5_118320 Lactuca sativa HOM05D001848 ORTHO05D001295 8.9e-08 60.5 106 39.6
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 8.9e-08 60.5 98 38.8
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 8.9e-08 60.5 105 38.1
Solyc01g066910.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 8.9e-08 60.5 98 39.8
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 1.5e-07 59.7 90 36.7
FvH4_4g11910 Fragaria vesca HOM05D001848 ORTHO05D001295 1.5e-07 59.7 102 40.2
FAN12G2359 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.5e-07 59.7 102 40.2
FAN17G1858 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.5e-07 59.7 102 38.2
MBI07_g42482_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 1.5e-07 59.7 91 39.6
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 92 37.0
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 90 36.7
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 2.0e-07 59.3 91 40.7
MELO3C012724.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.0e-07 59.3 102 33.3
FAN07G0789 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.0e-07 59.3 102 40.2
Hma1.2p1_0161F.1_g071380 Hydrangea macrophylla HOM05D001848 ORTHO05D001295 2.0e-07 59.3 80 42.5
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 2.0e-07 59.3 91 39.6
Psat0s3819g0040 Pisum sativum HOM05D001848 ORTHO05D001295 2.0e-07 59.3 98 35.7
BcaC03g17655 Brassica carinata HOM05D001848 ORTHO05D001295 2.6e-07 58.9 99 36.4
A02p37500 Brassica napus HOM05D001848 ORTHO05D001295 2.6e-07 58.9 82 42.7
BraA02t08737Z Brassica rapa HOM05D001848 ORTHO05D001295 2.6e-07 58.9 82 42.7
CANSAT11G0405 Cannabis sativa HOM05D001848 ORTHO05D001295 3.4e-07 58.5 96 36.5
CiPaw.05G061200 Carya illinoinensis HOM05D001848 ORTHO05D001295 3.4e-07 58.5 109 37.6
Psat7g184840 Pisum sativum HOM05D001848 ORTHO05D001295 3.4e-07 58.5 88 36.4
arahy.Tifrunner.gnm1.ann1.E6CSJF Arachis hypogaea HOM05D001848 ORTHO05D001295 4.4e-07 58.2 100 37.0
Ciclev10022967m.g Citrus clementina HOM05D001848 ORTHO05D001295 4.4e-07 58.2 72 47.2
DCAR_029929 Daucus carota HOM05D001848 ORTHO05D001295 4.4e-07 58.2 94 37.2
FAN22G1308 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.4e-07 58.2 102 39.2
Lsat_1_v5_gn_9_16260 Lactuca sativa HOM05D001848 ORTHO05D001295 4.4e-07 58.2 96 36.5
Medtr4g069220 Medicago truncatula HOM05D001848 ORTHO05D001295 4.4e-07 58.2 99 36.4
Potri.002G251000 Populus trichocarpa HOM05D001848 ORTHO05D001295 4.4e-07 58.2 94 41.5
QL10p044006 Quercus lobata HOM05D001848 ORTHO05D001295 4.4e-07 58.2 74 44.6
Sabra02G0190900 Salix brachista HOM05D001848 ORTHO05D001295 4.4e-07 58.2 95 41.1
Sed0004601 Sechium edule HOM05D001848 ORTHO05D001295 4.4e-07 58.2 92 39.1
Sopen01g028530 Solanum pennellii HOM05D001848 ORTHO05D001295 4.4e-07 58.2 90 40.0
CsaV3_7G026880 Cucumis sativus L. HOM05D001848 ORTHO05D001295 5.8e-07 57.8 79 41.8
MD10G1081500 Malus domestica HOM05D001848 ORTHO05D001295 5.8e-07 57.8 105 41.0
Manes.11G113800 Manihot esculenta HOM05D001848 ORTHO05D001295 5.8e-07 57.8 104 38.5
Nitab4.5_0005076g0020 Nicotiana tabacum HOM05D001848 ORTHO05D001295 5.8e-07 57.8 94 39.4
TPR.G26815 Trifolium pratense HOM05D001848 ORTHO05D001295 5.8e-07 57.8 102 36.3
ClCG07G016680 Citrullus lanatus HOM05D001848 ORTHO05D001295 7.5e-07 57.4 96 37.5
Os07g0290200 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 7.5e-07 57.4 93 38.7
VMungo1127G0744 Vigna mungo HOM05D001848 ORTHO05D001295 7.5e-07 57.4 97 36.1
arahy.Tifrunner.gnm1.ann1.PJ92NG Arachis hypogaea HOM05D001848 ORTHO05D001295 9.8e-07 57.0 100 37.0
C02p56570 Brassica napus HOM05D001848 ORTHO05D001295 9.8e-07 57.0 95 34.7
BolC2t11715H Brassica oleracea HOM05D001848 ORTHO05D001295 9.8e-07 57.0 95 34.7
Ca_07467_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 9.8e-07 57.0 92 37.0
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 9.8e-07 57.0 72 45.8
Actinidia00500 Actinidia chinensis HOM05D001848 ORTHO05D001295 1.3e-06 56.6 99 37.4
Migut.D00731 Erythranthe guttata HOM05D001848 ORTHO05D001295 1.3e-06 56.6 77 39.0
Lalb_Chr03g0041101 Lupinus albus HOM05D001848 ORTHO05D001295 1.3e-06 56.6 91 34.1
Medtr7g052640 Medicago truncatula HOM05D001848 ORTHO05D001295 1.3e-06 56.6 92 35.9
PGR083G0807 Punica granatum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 97 37.1
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 1.3e-06 56.6 97 38.1
Sc17g0001780 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.3e-06 56.6 104 35.6
VMungo0720G2320 Vigna mungo HOM05D001848 ORTHO05D001295 1.3e-06 56.6 96 35.4
Eucgr.H00727 Eucalyptus grandis HOM05D001848 ORTHO05D001295 1.7e-06 56.2 72 43.1
Glyma.12G045500 Glycine max HOM05D001848 ORTHO05D001295 1.7e-06 56.2 93 33.3
MD05G1070500 Malus domestica HOM05D001848 ORTHO05D001295 1.7e-06 56.2 98 43.9
Cpa.g.sc8.74 Carica papaya HOM05D001848 ORTHO05D001295 2.9e-06 55.5 99 39.4
HanXRQChr10g0307341 Helianthus annuus HOM05D001848 ORTHO05D001295 2.9e-06 55.5 101 39.6
Os07g0287400 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 2.9e-06 55.5 75 42.7
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.9e-06 55.5 97 34.0
PGSC0003DMG400011323 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.9e-06 55.5 91 38.5
HPP92_009932 Vanilla planifolia HOM05D001848 ORTHO05D001295 2.9e-06 55.5 82 41.5
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 3.7e-06 55.1 103 35.0
FvH4_4g11920 Fragaria vesca HOM05D001848 ORTHO05D001295 3.7e-06 55.1 102 33.3
FAN07G2298 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.7e-06 55.1 102 34.3
FAN12G1139 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.7e-06 55.1 102 33.3
FAN12G1690 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.7e-06 55.1 102 33.3
Thecc.04G175600 Theobroma cacao HOM05D001848 ORTHO05D001295 3.7e-06 55.1 88 37.5
TPR.G28533 Trifolium pratense HOM05D001848 ORTHO05D001295 3.7e-06 55.1 102 32.4
FAN22G1115 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.9e-06 54.7 102 34.3
Phvul.011G047400 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 4.9e-06 54.7 90 32.2
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 4.9e-06 54.7 98 34.7
ClCG09G008160 Citrullus lanatus HOM05D001848 ORTHO05D001295 6.4e-06 54.3 93 33.3
Duzib268G0398 Durio zibethinus HOM05D001848 ORTHO05D001295 6.4e-06 54.3 96 37.5
Gorai.011G140500 Gossypium raimondii HOM05D001848 ORTHO05D001295 6.4e-06 54.3 91 39.6
Solyc07g065110.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 6.4e-06 54.3 88 36.4
PGSC0003DMG400022295 Solanum tuberosum HOM05D001848 ORTHO05D001295 6.4e-06 54.3 86 37.2
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 8.3e-06 53.9 94 33.0
Gohir.A10G139300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 8.3e-06 53.9 91 39.6
Gohir.A10G139400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 8.3e-06 53.9 91 40.7
Gohir.D10G127500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 8.3e-06 53.9 91 40.7
Gorai.011G140600 Gossypium raimondii HOM05D001848 ORTHO05D001295 8.3e-06 53.9 91 40.7
Peaxi162Scf00038g01729 Petunia axillaris HOM05D001848 ORTHO05D001295 8.3e-06 53.9 94 40.4


User provided reference genes

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